Gene name: SBP1
Reference locus (S288C): YHL034C
Gene biotype: protein_coding
Description: Single-stranded nucleic acid-binding protein; Protein that binds eIF4G and has a role in repression of translation; has an RGG motif; found in cytoplasmic P bodies; binds to mRNAs under glucose starvation stress, most often in the 5' UTR; found associated with small nucleolar RNAs snR10 and snR11; SBP1 has a paralog, RNP1, that arose from the whole genome duplication; Belongs to the RRM GAR family
Top 10 interactors (score): PAB1 (0.912); TIF4631 (0.889); HMT1 (0.874); CBF5 (0.846); SCD6 (0.797); GIS2 (0.792); CDC33 (0.779); TIF4632 (0.757); EAP1 (0.75); SLF1 (0.746); SRO9 (0.729); DHH1 (0.713); CBC2 (0.669); TEF2 (0.628); DCP2 (0.627); SCP160 (0.617); PUB1 (0.616); EDC3 (0.615); MPT5 (0.607); CAF20 (0.606)
Homologues (species, bitscore): NCL (Homo sapiens, 80.1); Ncl (Mus musculus, 81.6); ncl (Danio rerio, 75.5); ncl (Xenopus tropicalis, 50.4); sqd (Drosophila melanogaster, 63.5); hrp-2 (Caenorhabditis elegans, 54.3); AT5G40490 (Arabidopsis thaliana, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:28046-28930:- | gene-YHL034C_AKU4011 | rna-NM_001179114.1_AKU4011 | cds-NP_011829.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000180.1:47896-48780:+ | gene-YHL034C_BG1 | rna-NM_001179114.1_BG1 | cds-NP_011829.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:34708-35592:- | gene-YHL034C_Bruggeman | rna-NM_001179114.1_Bruggeman | cds-NP_011829.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:28963-29847:- | gene-YHL034C_CAT1 | rna-NM_001179114.1_CAT1 | cds-NP_011829.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:28649-29533:- | gene-YHL034C_CBS1585 | rna-NM_001179114.1_CBS1585 | cds-NP_011829.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:21233-22117:- | gene-YHL034C_CBS436 | rna-NM_001179114.1_CBS436 | cds-NP_011829.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:28598-29482:- | gene-YHL034C_CBS6412 | rna-NM_001179114.1_CBS6412 | cds-NP_011829.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:28064-28948:- | gene-YHL034C_CBS6413 | rna-NM_001179114.1_CBS6413 | cds-NP_011829.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:26358-27242:- | gene-YHL034C_CENPK1137D | rna-NM_001179114.1_CENPK1137D | cds-NP_011829.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:28274-29158:- | gene-YHL034C_EthanolRed | rna-NM_001179114.1_EthanolRed | cds-NP_011829.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:28598-29482:- | gene-YHL034C_FaliES1 | rna-NM_001179114.1_FaliES1 | cds-NP_011829.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000157.1:20555-21439:- | gene-YHL034C_JAY291 | rna-NM_001179114.1_JAY291 | cds-NP_011829.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:30542-31426:- | gene-YHL034C_MUCL30387 | rna-NM_001179114.1_MUCL30387 | cds-NP_011829.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:32381-33265:- | gene-YHL034C_MUCL30388 | rna-NM_001179114.1_MUCL30388 | cds-NP_011829.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:27640-28524:- | gene-YHL034C_MUCL39482 | rna-NM_001179114.1_MUCL39482 | cds-NP_011829.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:31611-32495:- | gene-YHL034C_MUCL42920 | rna-NM_001179114.1_MUCL42920 | cds-NP_011829.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:33075-33959:- | gene-YHL034C_NCIM3186 | rna-NM_001179114.1_NCIM3186 | cds-NP_011829.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:27126-28010:- | gene-YHL034C_NCYC1407 | rna-NM_001179114.1_NCYC1407 | cds-NP_011829.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:23417-24301:- | gene-YHL034C_PE2H3 | rna-NM_001179114.1_PE2H3 | cds-NP_011829.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:30794-31678:- | gene-YHL034C_PE2H4 | rna-NM_001179114.1_PE2H4 | cds-NP_011829.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:33193-34077:- | gene-YHL034C_S288C | rna-NM_001179114.1_S288C | cds-NP_011829.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:17482-18366:- | gene-YHL034C_SA1 | rna-NM_001179114.1_SA1 | cds-NP_011829.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:29687-30571:- | gene-YHL034C_ThermosaccDry | rna-NM_001179114.1_ThermosaccDry | cds-NP_011829.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:34397-35281:- | gene-YHL034C_VR1 | rna-NM_001179114.1_VR1 | cds-NP_011829.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:20902-21786:- | gene-YHL034C_ZTW1 | rna-NM_001179114.1_ZTW1 | cds-NP_011829.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:27232-28116:- | gene-YHL034C_Sparadoxus | rna-NM_001179114.1_Sparadoxus | cds-NP_011829.1_Sparadoxus | 93.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |