Gene name: SBH1
Reference locus (S288C): YER087C-B
Gene biotype: protein_coding
Description: Arf family guanine nucleotide exchange factor sbh1; Protein transport protein SBH1; Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p); involved in protein translocation into the endoplasmic reticulum; interacts with the exocyst complex and also with Rtn1p; cotranslationally N-acetylated by NatA; SBH1 has a paralog, SBH2, that arose from the whole genome duplication; Belongs to the SEC61-beta family
Top 10 interactors (score): SSS1 (0.999); OST3 (0.999); SEC61 (0.999); WBP1 (0.999); OST1 (0.999); SEC62 (0.999); OST4 (0.999); STT3 (0.999); SEC63 (0.999); OST2 (0.999); SEC72 (0.997); SSH1 (0.997); SEC66 (0.992); SBH2 (0.981); ERV25 (0.979); CNE1 (0.953); KAR2 (0.945); SEC11 (0.908); GET3 (0.901); SPC1 (0.885)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:326356-326604:- | gene-YER087C-B_AKU4011 | rna-NM_001180032.3_AKU4011 | cds-NP_011011.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:99194-99442:+ | gene-YER087C-B_BG1 | rna-NM_001180032.3_BG1 | cds-NP_011011.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:335956-336204:- | gene-YER087C-B_Bruggeman | rna-NM_001180032.3_Bruggeman | cds-NP_011011.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:330307-330555:- | gene-YER087C-B_CAT1 | rna-NM_001180032.3_CAT1 | cds-NP_011011.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:326221-326469:- | gene-YER087C-B_CBS1585 | rna-NM_001180032.3_CBS1585 | cds-NP_011011.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:328363-328611:- | gene-YER087C-B_CBS436 | rna-NM_001180032.3_CBS436 | cds-NP_011011.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:325677-325925:- | gene-YER087C-B_CBS6412 | rna-NM_001180032.3_CBS6412 | cds-NP_011011.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:331667-331915:- | gene-YER087C-B_CBS6413 | rna-NM_001180032.3_CBS6413 | cds-NP_011011.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:330497-330745:- | gene-YER087C-B_CENPK1137D | rna-NM_001180032.3_CENPK1137D | cds-NP_011011.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:326699-326947:- | gene-YER087C-B_EthanolRed | rna-NM_001180032.3_EthanolRed | cds-NP_011011.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:327144-327392:- | gene-YER087C-B_FaliES1 | rna-NM_001180032.3_FaliES1 | cds-NP_011011.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000153.1:42204-42452:- | gene-YER087C-B_JAY291 | rna-NM_001180032.3_JAY291 | cds-NP_011011.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:331351-331599:- | gene-YER087C-B_MUCL30387 | rna-NM_001180032.3_MUCL30387 | cds-NP_011011.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:327022-327270:- | gene-YER087C-B_MUCL30388 | rna-NM_001180032.3_MUCL30388 | cds-NP_011011.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:325245-325493:- | gene-YER087C-B_MUCL39482 | rna-NM_001180032.3_MUCL39482 | cds-NP_011011.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:332489-332737:- | gene-YER087C-B_MUCL42920 | rna-NM_001180032.3_MUCL42920 | cds-NP_011011.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:332581-332829:- | gene-YER087C-B_NCIM3186 | rna-NM_001180032.3_NCIM3186 | cds-NP_011011.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:330308-330556:- | gene-YER087C-B_NCYC1407 | rna-NM_001180032.3_NCYC1407 | cds-NP_011011.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:340958-341206:- | gene-YER087C-B_PE2H3 | rna-NM_001180032.3_PE2H3 | cds-NP_011011.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:330899-331147:- | gene-YER087C-B_PE2H4 | rna-NM_001180032.3_PE2H4 | cds-NP_011011.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:332582-332830:- | gene-YER087C-B_S288C | rna-NM_001180032.3_S288C | cds-NP_011011.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:42210-42458:- | gene-YER087C-B_SA1 | rna-NM_001180032.3_SA1 | cds-NP_011011.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:327941-328189:- | gene-YER087C-B_ThermosaccDry | rna-NM_001180032.3_ThermosaccDry | cds-NP_011011.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:328638-328886:- | gene-YER087C-B_VR1 | rna-NM_001180032.3_VR1 | cds-NP_011011.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:325103-325351:- | gene-YER087C-B_ZTW1 | rna-NM_001180032.3_ZTW1 | cds-NP_011011.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:328521-328769:- | gene-YER087C-B_Sparadoxus | rna-NM_001180032.3_Sparadoxus | cds-NP_011011.3_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |