Gene name: SAM50
Reference locus (S288C): YNL026W
Gene biotype: protein_coding
Description: Component of the Sorting and Assembly Machinery (SAM) complex; the SAM (or TOB) complex is located in the mitochondrial outer membrane; the complex binds precursors of beta-barrel proteins and facilitates their outer membrane insertion; homologous to bacterial Omp85
Top 10 interactors (score): MDM10 (0.999); TOM40 (0.999); MIC60 (0.999); SAM37 (0.999); SAM35 (0.999); TOM22 (0.999); MIC10 (0.998); TOM70 (0.997); TOM7 (0.997); TOM20 (0.997); POR1 (0.996); TOM5 (0.98); MIC19 (0.955); TIM8 (0.951); TOM6 (0.944); MMM1 (0.939); CDC48 (0.932); TIM13 (0.932); MDM12 (0.931); MDM34 (0.927)
Homologues (species, bitscore): SAMM50 (Homo sapiens, 108.6); Samm50 (Mus musculus, 107.8); samm50l (Danio rerio, 113.6); samm50 (Xenopus tropicalis, 58.2); CG7639 (Drosophila melanogaster, 85.1); gop-3 (Caenorhabditis elegans, 66.6); AT3G11070 (Arabidopsis thaliana, 62.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:564379-565833:+ | gene-YNL026W_AKU4011 | rna-NM_001182865.1_AKU4011 | cds-NP_014372.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:474306-475760:- | gene-YNL026W_BG1 | rna-NM_001182865.1_BG1 | cds-NP_014372.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:581801-583255:+ | gene-YNL026W_Bruggeman | rna-NM_001182865.1_Bruggeman | cds-NP_014372.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:617253-618707:+ | gene-YNL026W_CAT1 | rna-NM_001182865.1_CAT1 | cds-NP_014372.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:570063-571517:+ | gene-YNL026W_CBS1585 | rna-NM_001182865.1_CBS1585 | cds-NP_014372.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:632478-633932:+ | gene-YNL026W_CBS436 | rna-NM_001182865.1_CBS436 | cds-NP_014372.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:559896-561350:+ | gene-YNL026W_CBS6412 | rna-NM_001182865.1_CBS6412 | cds-NP_014372.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:561237-562691:+ | gene-YNL026W_CBS6413 | rna-NM_001182865.1_CBS6413 | cds-NP_014372.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:575527-576981:+ | gene-YNL026W_CENPK1137D | rna-NM_001182865.1_CENPK1137D | cds-NP_014372.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:566465-567919:+ | gene-YNL026W_EthanolRed | rna-NM_001182865.1_EthanolRed | cds-NP_014372.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:557489-558943:+ | gene-YNL026W_FaliES1 | rna-NM_001182865.1_FaliES1 | cds-NP_014372.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000387.1:14890-16344:- | gene-YNL026W_JAY291 | rna-NM_001182865.1_JAY291 | cds-NP_014372.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:577683-579137:+ | gene-YNL026W_MUCL30387 | rna-NM_001182865.1_MUCL30387 | cds-NP_014372.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:620476-621930:+ | gene-YNL026W_MUCL30388 | rna-NM_001182865.1_MUCL30388 | cds-NP_014372.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:561658-563112:+ | gene-YNL026W_MUCL39482 | rna-NM_001182865.1_MUCL39482 | cds-NP_014372.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:565221-566675:+ | gene-YNL026W_MUCL42920 | rna-NM_001182865.1_MUCL42920 | cds-NP_014372.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:581889-583343:+ | gene-YNL026W_NCIM3186 | rna-NM_001182865.1_NCIM3186 | cds-NP_014372.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:563863-565317:+ | gene-YNL026W_NCYC1407 | rna-NM_001182865.1_NCYC1407 | cds-NP_014372.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:566391-567845:+ | gene-YNL026W_PE2H3 | rna-NM_001182865.1_PE2H3 | cds-NP_014372.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:567705-569159:+ | gene-YNL026W_PE2H4 | rna-NM_001182865.1_PE2H4 | cds-NP_014372.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:581920-583374:+ | gene-YNL026W_S288C | rna-NM_001182865.1_S288C | cds-NP_014372.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000109.1:7950-9404:+ | gene-YNL026W_SA1 | rna-NM_001182865.1_SA1 | cds-NP_014372.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:558076-559530:+ | gene-YNL026W_ThermosaccDry | rna-NM_001182865.1_ThermosaccDry | cds-NP_014372.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:583216-584670:- | gene-YNL026W_VR1 | rna-NM_001182865.1_VR1 | cds-NP_014372.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:473910-475364:- | gene-YNL026W_ZTW1 | rna-NM_001182865.1_ZTW1 | cds-NP_014372.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:573369-574823:+ | gene-YNL026W_Sparadoxus | rna-NM_001182865.1_Sparadoxus | cds-NP_014372.1_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |