Gene name: RXT3
Reference locus (S288C): YDL076C
Gene biotype: protein_coding
Description: Transcriptional regulatory protein RXT3; Component of the Rpd3L histone deacetylase complex; involved in histone deacetylation; protein abundance increases in response to DNA replication stress; Belongs to the RXT3 family
Top 10 interactors (score): CTI6 (0.997); RXT2 (0.997); SDS3 (0.995); UME1 (0.995); RPD3 (0.995); SIN3 (0.993); UME6 (0.991); SAP30 (0.986); PHO23 (0.985); DEP1 (0.979); RCO1 (0.97); EAF3 (0.97); ASH1 (0.969); DOT6 (0.969); SNT1 (0.962); TOD6 (0.915); SET3 (0.912); HOS2 (0.908); TOS4 (0.906); SIF2 (0.902)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:305266-306150:- | gene-YDL076C_AKU4011 | rna-NM_001180135.1_AKU4011 | cds-NP_010207.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:243778-244662:+ | gene-YDL076C_BG1 | rna-NM_001180135.1_BG1 | cds-NP_010207.1_BG1 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:322950-323964:- | gene-YDL076C_Bruggeman | rna-NM_001180135.1_Bruggeman | cds-NP_010207.1_Bruggeman | 86.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:319442-320326:- | gene-YDL076C_CAT1 | rna-NM_001180135.1_CAT1 | cds-NP_010207.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:303538-304422:- | gene-YDL076C_CBS1585 | rna-NM_001180135.1_CBS1585 | cds-NP_010207.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:320219-321103:- | gene-YDL076C_CBS436 | rna-NM_001180135.1_CBS436 | cds-NP_010207.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:301965-302849:- | gene-YDL076C_CBS6412 | rna-NM_001180135.1_CBS6412 | cds-NP_010207.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:321591-322475:- | gene-YDL076C_CBS6413 | rna-NM_001180135.1_CBS6413 | cds-NP_010207.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:319491-320375:- | gene-YDL076C_CENPK1137D | rna-NM_001180135.1_CENPK1137D | cds-NP_010207.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:316304-317188:- | gene-YDL076C_EthanolRed | rna-NM_001180135.1_EthanolRed | cds-NP_010207.1_EthanolRed | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:322276-323160:- | gene-YDL076C_FaliES1 | rna-NM_001180135.1_FaliES1 | cds-NP_010207.1_FaliES1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:92344-93228:- | gene-YDL076C_JAY291 | rna-NM_001180135.1_JAY291 | cds-NP_010207.1_JAY291 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:320467-321351:- | gene-YDL076C_MUCL30387 | rna-NM_001180135.1_MUCL30387 | cds-NP_010207.1_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:311493-312480:- | gene-YDL076C_MUCL30388 | rna-NM_001180135.1_MUCL30388 | cds-NP_010207.1_MUCL30388 | 88.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:304643-305527:- | gene-YDL076C_MUCL39482 | rna-NM_001180135.1_MUCL39482 | cds-NP_010207.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:226653-227537:- | gene-YDL076C_MUCL42920 | rna-NM_001180135.1_MUCL42920 | cds-NP_010207.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:320591-321475:- | gene-YDL076C_NCIM3186 | rna-NM_001180135.1_NCIM3186 | cds-NP_010207.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:304657-305541:- | gene-YDL076C_NCYC1407 | rna-NM_001180135.1_NCYC1407 | cds-NP_010207.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:311462-312346:- | gene-YDL076C_PE2H3 | rna-NM_001180135.1_PE2H3 | cds-NP_010207.1_PE2H3 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:311441-312325:- | gene-YDL076C_PE2H4 | rna-NM_001180135.1_PE2H4 | cds-NP_010207.1_PE2H4 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:320668-321552:- | gene-YDL076C_S288C | rna-NM_001180135.1_S288C | cds-NP_010207.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:113369-114253:+ | gene-YDL076C_SA1 | rna-NM_001180135.1_SA1 | cds-NP_010207.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:321787-322671:- | gene-YDL076C_ThermosaccDry | rna-NM_001180135.1_ThermosaccDry | cds-NP_010207.1_ThermosaccDry | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:323859-324743:- | gene-YDL076C_VR1 | rna-NM_001180135.1_VR1 | cds-NP_010207.1_VR1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:319702-320586:- | gene-YDL076C_ZTW1 | rna-NM_001180135.1_ZTW1 | cds-NP_010207.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:321842-322726:- | gene-YDL076C_Sparadoxus | rna-NM_001180135.1_Sparadoxus | cds-NP_010207.1_Sparadoxus | 87.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |