Gene name: RVB1
Reference locus (S288C): YDR190C
Gene biotype: protein_coding
Description: RuvB-like protein 1; ATP-dependent DNA helicase, also known as pontin; member of the AAA+ and RuvB-like protein families; similar to Rvb2p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly
Top 10 interactors (score): TAH1 (0.999); HTZ1 (0.999); VPS71 (0.999); TRA1 (0.999); ARP4 (0.999); INO80 (0.999); PIH1 (0.999); IES6 (0.999); ARP6 (0.999); YAF9 (0.999); RVB2 (0.999); SWR1 (0.999); ARP5 (0.999); VPS72 (0.999); TTI1 (0.999); SWC4 (0.999); ACT1 (0.999); SWC5 (0.997); ESA1 (0.996); RPB5 (0.996)
Homologues (species, bitscore): RUVBL1 (Homo sapiens, 652.9); Ruvbl1 (Mus musculus, 653.7); ruvbl1 (Danio rerio, 649.4); ruvbl1 (Xenopus tropicalis, 601.7); pont (Drosophila melanogaster, 641.7); ruvb-1 (Caenorhabditis elegans, 544.3); RIN1 (Arabidopsis thaliana, 625.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:809137-810528:- | gene-YDR190C_AKU4011 | rna-NM_001180498.1_AKU4011 | cds-NP_010476.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:315290-316681:+ | gene-YDR190C_BG1 | rna-NM_001180498.1_BG1 | cds-NP_010476.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:841550-842941:- | gene-YDR190C_Bruggeman | rna-NM_001180498.1_Bruggeman | cds-NP_010476.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:828818-830209:- | gene-YDR190C_CAT1 | rna-NM_001180498.1_CAT1 | cds-NP_010476.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:799499-800890:- | gene-YDR190C_CBS1585 | rna-NM_001180498.1_CBS1585 | cds-NP_010476.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:828503-829894:- | gene-YDR190C_CBS436 | rna-NM_001180498.1_CBS436 | cds-NP_010476.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:796306-797697:- | gene-YDR190C_CBS6412 | rna-NM_001180498.1_CBS6412 | cds-NP_010476.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:826848-828239:- | gene-YDR190C_CBS6413 | rna-NM_001180498.1_CBS6413 | cds-NP_010476.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:839436-840827:- | gene-YDR190C_CENPK1137D | rna-NM_001180498.1_CENPK1137D | cds-NP_010476.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:809897-811288:- | gene-YDR190C_EthanolRed | rna-NM_001180498.1_EthanolRed | cds-NP_010476.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:818109-819500:- | gene-YDR190C_FaliES1 | rna-NM_001180498.1_FaliES1 | cds-NP_010476.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:29860-31251:+ | gene-YDR190C_JAY291 | rna-NM_001180498.1_JAY291 | cds-NP_010476.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:827203-828594:- | gene-YDR190C_MUCL30387 | rna-NM_001180498.1_MUCL30387 | cds-NP_010476.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:815452-816843:- | gene-YDR190C_MUCL30388 | rna-NM_001180498.1_MUCL30388 | cds-NP_010476.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:800946-802337:- | gene-YDR190C_MUCL39482 | rna-NM_001180498.1_MUCL39482 | cds-NP_010476.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:739646-741037:- | gene-YDR190C_MUCL42920 | rna-NM_001180498.1_MUCL42920 | cds-NP_010476.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:840527-841918:- | gene-YDR190C_NCIM3186 | rna-NM_001180498.1_NCIM3186 | cds-NP_010476.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:804080-805471:- | gene-YDR190C_NCYC1407 | rna-NM_001180498.1_NCYC1407 | cds-NP_010476.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:820822-822213:- | gene-YDR190C_PE2H3 | rna-NM_001180498.1_PE2H3 | cds-NP_010476.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:820127-821518:- | gene-YDR190C_PE2H4 | rna-NM_001180498.1_PE2H4 | cds-NP_010476.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:840604-841995:- | gene-YDR190C_S288C | rna-NM_001180498.1_S288C | cds-NP_010476.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:186306-187697:- | gene-YDR190C_SA1 | rna-NM_001180498.1_SA1 | cds-NP_010476.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:816264-817655:- | gene-YDR190C_ThermosaccDry | rna-NM_001180498.1_ThermosaccDry | cds-NP_010476.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:831481-832872:- | gene-YDR190C_VR1 | rna-NM_001180498.1_VR1 | cds-NP_010476.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:78977-80368:- | gene-YDR190C_ZTW1 | rna-NM_001180498.1_ZTW1 | cds-NP_010476.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:821205-822596:- | gene-YDR190C_Sparadoxus | rna-NM_001180498.1_Sparadoxus | cds-NP_010476.1_Sparadoxus | 92.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |