Gene name: RUP1
Reference locus (S288C): YOR138C
Gene biotype: protein_coding
Description: UBA domain-containing protein RUP1; Protein that regulates ubiquitination of Rsp5p; has a WW domain consensus motif of PPPSY (residues 131-135) that mediates binding of Rsp5p to Ubp2p; contains an UBA domain; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): UBP2 (0.993); RSP5 (0.978); FRA1 (0.653); FAP1 (0.644); ECM2 (0.572); HSE1 (0.532); UBC4 (0.523); FUR4 (0.522); YPQ1 (0.522); MTM1 (0.521); MET12 (0.499); RTC2 (0.489); HEL2 (0.487); MDM30 (0.485); BUL1 (0.485); VBA5 (0.481); BUL2 (0.481); HUL5 (0.46); LYS1 (0.448); HUA1 (0.446)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:587761-589776:- | gene-YOR138C_AKU4011 | rna-NM_001183557.1_AKU4011 | cds-NP_014781.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:8832-10847:+ | gene-YOR138C_BG1 | rna-NM_001183557.1_BG1 | cds-NP_014781.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:571921-573936:- | gene-YOR138C_Bruggeman | rna-NM_001183557.1_Bruggeman | cds-NP_014781.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:571942-573957:- | gene-YOR138C_CAT1 | rna-NM_001183557.1_CAT1 | cds-NP_014781.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:563941-565956:- | gene-YOR138C_CBS1585 | rna-NM_001183557.1_CBS1585 | cds-NP_014781.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:568645-570660:- | gene-YOR138C_CBS436 | rna-NM_001183557.1_CBS436 | cds-NP_014781.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:561428-563443:- | gene-YOR138C_CBS6412 | rna-NM_001183557.1_CBS6412 | cds-NP_014781.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:570222-572237:- | gene-YOR138C_CBS6413 | rna-NM_001183557.1_CBS6413 | cds-NP_014781.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:584060-586075:- | gene-YOR138C_CENPK1137D | rna-NM_001183557.1_CENPK1137D | cds-NP_014781.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:564073-566088:- | gene-YOR138C_EthanolRed | rna-NM_001183557.1_EthanolRed | cds-NP_014781.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:568926-570941:- | gene-YOR138C_FaliES1 | rna-NM_001183557.1_FaliES1 | cds-NP_014781.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:72608-74623:+ | gene-YOR138C_JAY291 | rna-NM_001183557.1_JAY291 | cds-NP_014781.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:576478-578493:- | gene-YOR138C_MUCL30387 | rna-NM_001183557.1_MUCL30387 | cds-NP_014781.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:582560-584575:- | gene-YOR138C_MUCL30388 | rna-NM_001183557.1_MUCL30388 | cds-NP_014781.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:572015-574030:- | gene-YOR138C_MUCL39482 | rna-NM_001183557.1_MUCL39482 | cds-NP_014781.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:587613-589628:- | gene-YOR138C_MUCL42920 | rna-NM_001183557.1_MUCL42920 | cds-NP_014781.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:584198-586213:- | gene-YOR138C_NCIM3186 | rna-NM_001183557.1_NCIM3186 | cds-NP_014781.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:578281-580296:- | gene-YOR138C_NCYC1407 | rna-NM_001183557.1_NCYC1407 | cds-NP_014781.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:576788-578803:- | gene-YOR138C_PE2H3 | rna-NM_001183557.1_PE2H3 | cds-NP_014781.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:587165-589180:- | gene-YOR138C_PE2H4 | rna-NM_001183557.1_PE2H4 | cds-NP_014781.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:584309-586324:- | gene-YOR138C_S288C | rna-NM_001183557.1_S288C | cds-NP_014781.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:6774-8789:- | gene-YOR138C_SA1 | rna-NM_001183557.1_SA1 | cds-NP_014781.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:568109-570124:- | gene-YOR138C_ThermosaccDry | rna-NM_001183557.1_ThermosaccDry | cds-NP_014781.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:631786-633801:- | gene-YOR138C_VR1 | rna-NM_001183557.1_VR1 | cds-NP_014781.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:301559-303574:- | gene-YOR138C_ZTW1 | rna-NM_001183557.1_ZTW1 | cds-NP_014781.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:572954-574975:- | gene-YOR138C_Sparadoxus | rna-NM_001183557.1_Sparadoxus | cds-NP_014781.1_Sparadoxus | 88.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |