RUF5-1 (YNCH0007W)

Gene profile

Gene name: RUF5-1
Reference locus (S288C): YNCH0007W
Gene biotype: ncRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005302.1:200671-201377:+ gene-YNCH0007W_AKU4011 rna-NR_132186.1_AKU4011 Unknown 98.3 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000053.1:120926-121632:+ gene-YNCH0007W_BG1 rna-NR_132186.1_BG1 Unknown 98.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005510.1:208423-209133:+ gene-YNCH0007W_Bruggeman rna-NR_132186.1_Bruggeman Unknown 99.4 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005526.1:203217-203923:+ gene-YNCH0007W_CAT1 rna-NR_132186.1_CAT1 Unknown 98.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005366.1:199777-200483:+ gene-YNCH0007W_CBS1585 rna-NR_132186.1_CBS1585 Unknown 98.3 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005350.1:195534-196239:+ gene-YNCH0007W_CBS436 rna-NR_132186.1_CBS436 Unknown 99.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005328.1:200009-200715:+ gene-YNCH0007W_CBS6412 rna-NR_132186.1_CBS6412 Unknown 98.1 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005318.1:200841-201547:+ gene-YNCH0007W_CBS6413 rna-NR_132186.1_CBS6413 Unknown 98.3 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005478.1:200168-200874:+ gene-YNCH0007W_EthanolRed rna-NR_132186.1_EthanolRed Unknown 98.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005542.1:201145-201851:+ gene-YNCH0007W_FaliES1 rna-NR_132186.1_FaliES1 Unknown 98.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005414.1:207882-208588:+ gene-YNCH0007W_MUCL30387 rna-NR_132186.1_MUCL30387 Unknown 98.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005446.1:208058-208767:+ gene-YNCH0007W_MUCL30388 rna-NR_132186.1_MUCL30388 Unknown 99.5 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005286.1:200062-200768:+ gene-YNCH0007W_MUCL39482 rna-NR_132186.1_MUCL39482 Unknown 98.3 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005430.1:206966-207672:+ gene-YNCH0007W_MUCL42920 rna-NR_132186.1_MUCL42920 Unknown 98.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011817.1:212291-213000:+ gene-YNCH0007W_NCIM3186 rna-NR_132186.1_NCIM3186 Unknown 99.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005270.1:200326-201032:+ gene-YNCH0007W_NCYC1407 rna-NR_132186.1_NCYC1407 Unknown 98.3 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994147.1:202264-202969:+ gene-YNCH0007W_PE2H3 rna-NR_132186.1_PE2H3 Unknown 99.2 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999879.1:209711-210416:+ gene-YNCH0007W_PE2H4 rna-NR_132186.1_PE2H4 Unknown 99.2 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001140.6:212409-213118:+ gene-YNCH0007W_S288C rna-NR_132186.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000014.1:144323-145025:- gene-YNCH0007W_SA1 rna-NR_132186.1_SA1 Unknown 97.7 98.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005494.1:202236-202942:+ gene-YNCH0007W_ThermosaccDry rna-NR_132186.1_ThermosaccDry Unknown 98.4 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005462.1:209017-209693:+ gene-YNCH0007W_VR1 rna-NR_132186.1_VR1 Unknown 94.2 95.2 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000017.1:193789-194495:+ gene-YNCH0007W_ZTW1 rna-NR_132186.1_ZTW1 Unknown 98.5 99.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047494.1:199301-199995:+ gene-YNCH0007W_Sparadoxus rna-NR_132186.1_Sparadoxus Unknown 84.3 96.4 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files