RUF20 (YNCF0003C)

Gene profile

Gene name: RUF20
Reference locus (S288C): YNCF0003C
Gene biotype: ncRNA

Description: Unknown

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005300.1:127470-127913:- gene-YNCF0003C_AKU4011 rna-NR_132173.1_AKU4011 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
BG1 GCA_001932575.1 Bioethanol South America MSHP01000079.1:13195-13638:- gene-YNCF0003C_BG1 rna-NR_132173.1_BG1 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Bruggeman GCA_001738585.1 Bread Not Applicable CM005508.1:127037-127480:- gene-YNCF0003C_Bruggeman rna-NR_132173.1_Bruggeman Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CAT1 GCA_001738705.1 Bioethanol South America CM005524.1:133024-133467:- gene-YNCF0003C_CAT1 rna-NR_132173.1_CAT1 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS1585 GCA_001738375.1 Sake Asia CM005364.1:128295-128738:- gene-YNCF0003C_CBS1585 rna-NR_132173.1_CBS1585 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS436 GCA_001738355.1 Sake Asia CM005348.1:102967-103410:- gene-YNCF0003C_CBS436 rna-NR_132173.1_CBS436 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6412 GCA_001738345.1 Sake Asia CM005332.1:128036-128479:- gene-YNCF0003C_CBS6412 rna-NR_132173.1_CBS6412 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CBS6413 GCA_001738265.1 Sake Asia CM005316.1:130546-130989:- gene-YNCF0003C_CBS6413 rna-NR_132173.1_CBS6413 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001527.1:127345-127788:- gene-YNCF0003C_CENPK1137D rna-NR_132173.1_CENPK1137D Unknown 98.8 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
EthanolRed GCA_001738615.1 Bioethanol Asia CM005476.1:126456-126899:- gene-YNCF0003C_EthanolRed rna-NR_132173.1_EthanolRed Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
FaliES1 GCA_001738715.1 Bioethanol Asia CM005540.1:128103-128546:- gene-YNCF0003C_FaliES1 rna-NR_132173.1_FaliES1 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000450.1:13110-13553:- gene-YNCF0003C_JAY291 rna-NR_132173.1_JAY291 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30387 GCA_001738515.1 Bread Europe CM005412.1:128667-129110:- gene-YNCF0003C_MUCL30387 rna-NR_132173.1_MUCL30387 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL30388 GCA_001738495.1 Bread Europe CM005444.1:126640-127083:- gene-YNCF0003C_MUCL30388 rna-NR_132173.1_MUCL30388 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL39482 GCA_001738235.1 Sake Asia CM005284.1:126739-127182:- gene-YNCF0003C_MUCL39482 rna-NR_132173.1_MUCL39482 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
MUCL42920 GCA_001738485.1 Bread Europe CM005428.1:126003-126446:- gene-YNCF0003C_MUCL42920 rna-NR_132173.1_MUCL42920 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011815.1:131060-131404:- gene-YNCF0003C_NCIM3186 rna-NR_132173.1_NCIM3186 Unknown 76.5 77.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
NCYC1407 GCA_001738225.1 Sake Asia CM005268.1:127754-128197:- gene-YNCF0003C_NCYC1407 rna-NR_132173.1_NCYC1407 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H3 GCA_905220325.1 Bioethanol South America HG994145.1:147644-148087:- gene-YNCF0003C_PE2H3 rna-NR_132173.1_PE2H3 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
PE2H4 GCA_905220315.1 Bioethanol South America LR999877.1:147192-147635:- gene-YNCF0003C_PE2H4 rna-NR_132173.1_PE2H4 Unknown 99.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
S288C GCF_000146045.2 Laboratory Not applicable NC_001138.5:131061-131503:- gene-YNCF0003C_S288C rna-NR_132173.1_S288C Unknown 100.0 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
SA1 GCA_004114265.1 Bioethanol South America SDIA01000011.1:185934-186377:+ gene-YNCF0003C_SA1 rna-NR_132173.1_SA1 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005492.1:127263-127706:- gene-YNCF0003C_ThermosaccDry rna-NR_132173.1_ThermosaccDry Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
VR1 GCA_001738595.1 Bioethanol South America CM005460.1:137154-137597:- gene-YNCF0003C_VR1 rna-NR_132173.1_VR1 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000013.1:57712-58155:- gene-YNCF0003C_ZTW1 rna-NR_132173.1_ZTW1 Unknown 99.3 100.0 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047492.1:151787-152211:- gene-YNCF0003C_Sparadoxus rna-NR_132173.1_Sparadoxus Unknown 80.3 94.8 Unannotated 1 1 0 Unknown False non_coding non_coding non_coding

Additional files