Gene name: RUD3
Reference locus (S288C): YOR216C
Gene biotype: protein_coding
Description: GRIP domain-containing protein RUD3; Golgi matrix protein; involved in the structural organization of the cis-Golgi; interacts genetically with COG3 and USO1
Top 10 interactors (score): COY1 (0.981); USO1 (0.964); SGM1 (0.928); GRH1 (0.919); COG3 (0.89); IMH1 (0.859); COG2 (0.851); MDY2 (0.839); ARF1 (0.831); SYS1 (0.812); SED5 (0.809); GOS1 (0.774); SLY1 (0.758); SFT2 (0.751); ERV14 (0.746); ARL3 (0.733); SEC22 (0.674); COG5 (0.673); RCE1 (0.668); VRG4 (0.666)
Homologues (species, bitscore): BZRAP1 (Homo sapiens, 50.8); lama3 (Xenopus tropicalis, 51.2); epi-1 (Caenorhabditis elegans, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:738313-739767:- | gene-YOR216C_AKU4011 | rna-NM_001183635.3_AKU4011 | cds-NP_014859.3_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:140342-141796:- | gene-YOR216C_BG1 | rna-NM_001183635.3_BG1 | cds-NP_014859.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:723144-724598:- | gene-YOR216C_Bruggeman | rna-NM_001183635.3_Bruggeman | cds-NP_014859.3_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:724419-725873:- | gene-YOR216C_CAT1 | rna-NM_001183635.3_CAT1 | cds-NP_014859.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:721300-722754:- | gene-YOR216C_CBS1585 | rna-NM_001183635.3_CBS1585 | cds-NP_014859.3_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:719984-721438:- | gene-YOR216C_CBS436 | rna-NM_001183635.3_CBS436 | cds-NP_014859.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:718419-719873:- | gene-YOR216C_CBS6412 | rna-NM_001183635.3_CBS6412 | cds-NP_014859.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:727058-728512:- | gene-YOR216C_CBS6413 | rna-NM_001183635.3_CBS6413 | cds-NP_014859.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:747291-748745:- | gene-YOR216C_CENPK1137D | rna-NM_001183635.3_CENPK1137D | cds-NP_014859.3_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:714451-715905:- | gene-YOR216C_EthanolRed | rna-NM_001183635.3_EthanolRed | cds-NP_014859.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:719848-721302:- | gene-YOR216C_FaliES1 | rna-NM_001183635.3_FaliES1 | cds-NP_014859.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:105465-106919:+ | gene-YOR216C_JAY291 | rna-NM_001183635.3_JAY291 | cds-NP_014859.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:727107-728561:- | gene-YOR216C_MUCL30387 | rna-NM_001183635.3_MUCL30387 | cds-NP_014859.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:734524-735978:- | gene-YOR216C_MUCL30388 | rna-NM_001183635.3_MUCL30388 | cds-NP_014859.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:728629-730083:- | gene-YOR216C_MUCL39482 | rna-NM_001183635.3_MUCL39482 | cds-NP_014859.3_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:738206-739660:- | gene-YOR216C_MUCL42920 | rna-NM_001183635.3_MUCL42920 | cds-NP_014859.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:747414-748868:- | gene-YOR216C_NCIM3186 | rna-NM_001183635.3_NCIM3186 | cds-NP_014859.3_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:728731-730185:- | gene-YOR216C_NCYC1407 | rna-NM_001183635.3_NCYC1407 | cds-NP_014859.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:728117-729571:- | gene-YOR216C_PE2H3 | rna-NM_001183635.3_PE2H3 | cds-NP_014859.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:738494-739948:- | gene-YOR216C_PE2H4 | rna-NM_001183635.3_PE2H4 | cds-NP_014859.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:747525-748979:- | gene-YOR216C_S288C | rna-NM_001183635.3_S288C | cds-NP_014859.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:157524-158978:- | gene-YOR216C_SA1 | rna-NM_001183635.3_SA1 | cds-NP_014859.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:719033-720487:- | gene-YOR216C_ThermosaccDry | rna-NM_001183635.3_ThermosaccDry | cds-NP_014859.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:782558-784012:- | gene-YOR216C_VR1 | rna-NM_001183635.3_VR1 | cds-NP_014859.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:451935-453389:- | gene-YOR216C_ZTW1 | rna-NM_001183635.3_ZTW1 | cds-NP_014859.3_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:724918-726375:- | gene-YOR216C_Sparadoxus | rna-NM_001183635.3_Sparadoxus | cds-NP_014859.3_Sparadoxus | 87.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |