Gene name: RUB1
Reference locus (S288C): YDR139C
Gene biotype: protein_coding
Description: NEDD8-like protein RUB1; Ubiquitin-like protein with similarity to mammalian NEDD8; conjugation (neddylation) substrates include the cullins Cdc53p, Rtt101p, and Cul3p; activated by Ula1p and Uba3p (E1 enzyme pair); conjugation mediated by Ubc12p (E2 enzyme)
Top 10 interactors (score): CDC53 (0.998); UBC12 (0.993); UBA3 (0.992); ULA1 (0.992); YUH1 (0.99); SKP1 (0.98); RPL39 (0.976); RPL5 (0.975); RPS3 (0.974); CDC34 (0.971); RPS20 (0.971); RPS31 (0.971); RPS15 (0.97); RPL32 (0.969); RPS2 (0.969); RPL30 (0.968); RPL25 (0.968); RPL38 (0.967); ASC1 (0.967); RPS13 (0.966)
Homologues (species, bitscore): NEDD8 (Homo sapiens, 92.8); Nedd8 (Mus musculus, 92.8); nedd8 (Danio rerio, 91.3); nedd8 (Xenopus tropicalis, 92.0); Nedd8 (Drosophila melanogaster, 92.8); ned-8 (Caenorhabditis elegans, 92.4); RUB1 (Arabidopsis thaliana, 86.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:704553-704859:- | gene-YDR139C_AKU4011 | rna-NM_001180446.3_AKU4011 | cds-NP_010423.4_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:419980-420286:+ | gene-YDR139C_BG1 | rna-NM_001180446.3_BG1 | cds-NP_010423.4_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:736609-736915:- | gene-YDR139C_Bruggeman | rna-NM_001180446.3_Bruggeman | cds-NP_010423.4_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:724581-724887:- | gene-YDR139C_CAT1 | rna-NM_001180446.3_CAT1 | cds-NP_010423.4_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:695591-695897:- | gene-YDR139C_CBS1585 | rna-NM_001180446.3_CBS1585 | cds-NP_010423.4_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:721494-721800:- | gene-YDR139C_CBS436 | rna-NM_001180446.3_CBS436 | cds-NP_010423.4_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:691943-692249:- | gene-YDR139C_CBS6412 | rna-NM_001180446.3_CBS6412 | cds-NP_010423.4_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:720918-721224:- | gene-YDR139C_CBS6413 | rna-NM_001180446.3_CBS6413 | cds-NP_010423.4_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:726056-726362:- | gene-YDR139C_CENPK1137D | rna-NM_001180446.3_CENPK1137D | cds-NP_010423.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:706315-706621:- | gene-YDR139C_EthanolRed | rna-NM_001180446.3_EthanolRed | cds-NP_010423.4_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:713109-713415:- | gene-YDR139C_FaliES1 | rna-NM_001180446.3_FaliES1 | cds-NP_010423.4_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000002.1:65255-65561:- | gene-YDR139C_JAY291 | rna-NM_001180446.3_JAY291 | cds-NP_010423.4_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:722533-722839:- | gene-YDR139C_MUCL30387 | rna-NM_001180446.3_MUCL30387 | cds-NP_010423.4_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:711552-711858:- | gene-YDR139C_MUCL30388 | rna-NM_001180446.3_MUCL30388 | cds-NP_010423.4_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:696933-697239:- | gene-YDR139C_MUCL39482 | rna-NM_001180446.3_MUCL39482 | cds-NP_010423.4_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:634890-635196:- | gene-YDR139C_MUCL42920 | rna-NM_001180446.3_MUCL42920 | cds-NP_010423.4_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:733541-733847:- | gene-YDR139C_NCIM3186 | rna-NM_001180446.3_NCIM3186 | cds-NP_010423.4_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:696335-696641:- | gene-YDR139C_NCYC1407 | rna-NM_001180446.3_NCYC1407 | cds-NP_010423.4_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:715673-715979:- | gene-YDR139C_PE2H3 | rna-NM_001180446.3_PE2H3 | cds-NP_010423.4_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:714978-715284:- | gene-YDR139C_PE2H4 | rna-NM_001180446.3_PE2H4 | cds-NP_010423.4_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:733618-733924:- | gene-YDR139C_S288C | rna-NM_001180446.3_S288C | cds-NP_010423.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:82289-82595:- | gene-YDR139C_SA1 | rna-NM_001180446.3_SA1 | cds-NP_010423.4_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:712631-712937:- | gene-YDR139C_ThermosaccDry | rna-NM_001180446.3_ThermosaccDry | cds-NP_010423.4_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:725987-726293:- | gene-YDR139C_VR1 | rna-NM_001180446.3_VR1 | cds-NP_010423.4_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:710212-710518:- | gene-YDR139C_ZTW1 | rna-NM_001180446.3_ZTW1 | cds-NP_010423.4_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:714716-715022:- | gene-YDR139C_Sparadoxus | rna-NM_001180446.3_Sparadoxus | cds-NP_010423.4_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |