Gene name: RTT107
Reference locus (S288C): YHR154W
Gene biotype: protein_coding
Description: Regulator of Ty1 transposition protein 107; Protein implicated in Mms22-dependent DNA repair during S phase; involved in recruiting the SMC5/6 complex to double-strand breaks; DNA damage induces phosphorylation by Mec1p at one or more SQ/TQ motifs; interacts with Mms22p and Slx4p; has four BRCT domains; has a role in regulation of Ty1 transposition; relative distribution to nuclear foci increases upon DNA replication stress
Top 10 interactors (score): RAD9 (0.999); MMS22 (0.999); DPB11 (0.999); RTT101 (0.999); SMC6 (0.999); SLX4 (0.999); CYC8 (0.997); TEL1 (0.996); MMS1 (0.995); SGS1 (0.994); SWD3 (0.993); RAD50 (0.992); BRE2 (0.991); SMC5 (0.989); SWD1 (0.984); HTA1 (0.984); SRS2 (0.984); SLX1 (0.982); MUS81 (0.98); KRE29 (0.977)
Homologues (species, bitscore): AT4G02110 (Arabidopsis thaliana, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:390057-393269:+ | gene-YHR154W_AKU4011 | rna-NM_001179285.1_AKU4011 | cds-NP_012024.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:124468-127680:- | gene-YHR154W_BG1 | rna-NM_001179285.1_BG1 | cds-NP_012024.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:397297-400509:+ | gene-YHR154W_Bruggeman | rna-NM_001179285.1_Bruggeman | cds-NP_012024.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:392710-395922:+ | gene-YHR154W_CAT1 | rna-NM_001179285.1_CAT1 | cds-NP_012024.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:389514-392726:+ | gene-YHR154W_CBS1585 | rna-NM_001179285.1_CBS1585 | cds-NP_012024.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:386964-390176:+ | gene-YHR154W_CBS436 | rna-NM_001179285.1_CBS436 | cds-NP_012024.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:389954-393166:+ | gene-YHR154W_CBS6412 | rna-NM_001179285.1_CBS6412 | cds-NP_012024.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:390394-393606:+ | gene-YHR154W_CBS6413 | rna-NM_001179285.1_CBS6413 | cds-NP_012024.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:396138-399350:+ | gene-YHR154W_CENPK1137D | rna-NM_001179285.1_CENPK1137D | cds-NP_012024.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:448595-451807:+ | gene-YHR154W_EthanolRed | rna-NM_001179285.1_EthanolRed | cds-NP_012024.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:391038-394250:+ | gene-YHR154W_FaliES1 | rna-NM_001179285.1_FaliES1 | cds-NP_012024.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:45582-48794:- | gene-YHR154W_JAY291 | rna-NM_001179285.1_JAY291 | cds-NP_012024.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:398378-401590:+ | gene-YHR154W_MUCL30387 | rna-NM_001179285.1_MUCL30387 | cds-NP_012024.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:397819-401031:+ | gene-YHR154W_MUCL30388 | rna-NM_001179285.1_MUCL30388 | cds-NP_012024.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:389425-392637:+ | gene-YHR154W_MUCL39482 | rna-NM_001179285.1_MUCL39482 | cds-NP_012024.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:395982-399194:+ | gene-YHR154W_MUCL42920 | rna-NM_001179285.1_MUCL42920 | cds-NP_012024.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:402848-406060:+ | gene-YHR154W_NCIM3186 | rna-NM_001179285.1_NCIM3186 | cds-NP_012024.1_NCIM3186 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:391883-395095:+ | gene-YHR154W_NCYC1407 | rna-NM_001179285.1_NCYC1407 | cds-NP_012024.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:391022-394234:+ | gene-YHR154W_PE2H3 | rna-NM_001179285.1_PE2H3 | cds-NP_012024.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:398449-401661:+ | gene-YHR154W_PE2H4 | rna-NM_001179285.1_PE2H4 | cds-NP_012024.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:402966-406178:+ | gene-YHR154W_S288C | rna-NM_001179285.1_S288C | cds-NP_012024.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:45639-48851:- | gene-YHR154W_SA1 | rna-NM_001179285.1_SA1 | cds-NP_012024.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:392121-395333:+ | gene-YHR154W_ThermosaccDry | rna-NM_001179285.1_ThermosaccDry | cds-NP_012024.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:399944-403156:+ | gene-YHR154W_VR1 | rna-NM_001179285.1_VR1 | cds-NP_012024.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:382361-385573:+ | gene-YHR154W_ZTW1 | rna-NM_001179285.1_ZTW1 | cds-NP_012024.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:388529-391697:+ | gene-YHR154W_Sparadoxus | rna-NM_001179285.1_Sparadoxus | cds-NP_012024.1_Sparadoxus | 84.4 | 98.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |