Gene name: RTT106
Reference locus (S288C): YNL206C
Gene biotype: protein_coding
Description: Histone chaperone; involved in regulation of chromatin structure in both transcribed and silenced chromosomal regions; affects transcriptional elongation; has a role in regulation of Ty1 transposition; interacts physically and functionally with Chromatin Assembly Factor-1 (CAF-1); Belongs to the RTT106 family
Top 10 interactors (score): HHT2 (0.998); HHT1 (0.998); ASF1 (0.998); CAC2 (0.996); RLF2 (0.989); RTT109 (0.979); HHF1 (0.973); HIR2 (0.971); VPS75 (0.968); HIR1 (0.966); MSI1 (0.961); POB3 (0.945); SPT16 (0.945); HIR3 (0.93); YTA7 (0.909); HPC2 (0.904); SPT6 (0.859); NAP1 (0.855); GCN5 (0.853); BCD1 (0.847)
Homologues (species, bitscore): SSRP1 (Homo sapiens, 51.6); ssrp1b (Danio rerio, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:250566-251933:- | gene-YNL206C_AKU4011 | rna-NM_001183044.1_AKU4011 | cds-NP_014193.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:154514-155881:- | gene-YNL206C_BG1 | rna-NM_001183044.1_BG1 | cds-NP_014193.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:260612-261979:- | gene-YNL206C_Bruggeman | rna-NM_001183044.1_Bruggeman | cds-NP_014193.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:302853-304220:- | gene-YNL206C_CAT1 | rna-NM_001183044.1_CAT1 | cds-NP_014193.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:251212-252579:- | gene-YNL206C_CBS1585 | rna-NM_001183044.1_CBS1585 | cds-NP_014193.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:319497-320864:- | gene-YNL206C_CBS436 | rna-NM_001183044.1_CBS436 | cds-NP_014193.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:246624-247991:- | gene-YNL206C_CBS6412 | rna-NM_001183044.1_CBS6412 | cds-NP_014193.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:247645-249012:- | gene-YNL206C_CBS6413 | rna-NM_001183044.1_CBS6413 | cds-NP_014193.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:250636-252003:- | gene-YNL206C_CENPK1137D | rna-NM_001183044.1_CENPK1137D | cds-NP_014193.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:247530-248897:- | gene-YNL206C_EthanolRed | rna-NM_001183044.1_EthanolRed | cds-NP_014193.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:243443-244810:- | gene-YNL206C_FaliES1 | rna-NM_001183044.1_FaliES1 | cds-NP_014193.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:73554-74921:+ | gene-YNL206C_JAY291 | rna-NM_001183044.1_JAY291 | cds-NP_014193.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:256398-257765:- | gene-YNL206C_MUCL30387 | rna-NM_001183044.1_MUCL30387 | cds-NP_014193.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:290765-292132:- | gene-YNL206C_MUCL30388 | rna-NM_001183044.1_MUCL30388 | cds-NP_014193.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:248451-249818:- | gene-YNL206C_MUCL39482 | rna-NM_001183044.1_MUCL39482 | cds-NP_014193.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:250814-252181:- | gene-YNL206C_MUCL42920 | rna-NM_001183044.1_MUCL42920 | cds-NP_014193.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:256757-258124:- | gene-YNL206C_NCIM3186 | rna-NM_001183044.1_NCIM3186 | cds-NP_014193.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:250541-251908:- | gene-YNL206C_NCYC1407 | rna-NM_001183044.1_NCYC1407 | cds-NP_014193.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:247451-248818:- | gene-YNL206C_PE2H3 | rna-NM_001183044.1_PE2H3 | cds-NP_014193.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:246839-248206:- | gene-YNL206C_PE2H4 | rna-NM_001183044.1_PE2H4 | cds-NP_014193.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:256788-258155:- | gene-YNL206C_S288C | rna-NM_001183044.1_S288C | cds-NP_014193.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:155446-156813:+ | gene-YNL206C_SA1 | rna-NM_001183044.1_SA1 | cds-NP_014193.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:244300-245667:- | gene-YNL206C_ThermosaccDry | rna-NM_001183044.1_ThermosaccDry | cds-NP_014193.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:262805-264172:- | gene-YNL206C_VR1 | rna-NM_001183044.1_VR1 | cds-NP_014193.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:154133-155500:- | gene-YNL206C_ZTW1 | rna-NM_001183044.1_ZTW1 | cds-NP_014193.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:254616-255992:- | gene-YNL206C_Sparadoxus | rna-NM_001183044.1_Sparadoxus | cds-NP_014193.1_Sparadoxus | 86.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |