RTT105 (YER104W)

Gene profile

Gene name: RTT105
Reference locus (S288C): YER104W
Gene biotype: protein_coding

Description: Regulator of ty1 transposition protein 105; Protein with a role in regulation of Ty1 transposition

Top 10 interactors (score): RFA3 (0.808); RFA1 (0.77); RFA2 (0.695); MCM10 (0.497); PIF1 (0.45)

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005299.1:360689-361315:+ gene-YER104W_AKU4011 rna-NM_001178995.3_AKU4011 cds-NP_011030.3_AKU4011 99.6 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000011.1:64292-64918:- gene-YER104W_BG1 rna-NM_001178995.3_BG1 cds-NP_011030.3_BG1 99.5 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005507.1:371163-371789:+ gene-YER104W_Bruggeman rna-NM_001178995.3_Bruggeman cds-NP_011030.3_Bruggeman 99.8 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005523.1:365447-366073:+ gene-YER104W_CAT1 rna-NM_001178995.3_CAT1 cds-NP_011030.3_CAT1 99.8 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005363.1:360084-360710:+ gene-YER104W_CBS1585 rna-NM_001178995.3_CBS1585 cds-NP_011030.3_CBS1585 99.8 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005347.1:362788-363414:+ gene-YER104W_CBS436 rna-NM_001178995.3_CBS436 cds-NP_011030.3_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005331.1:359158-359784:+ gene-YER104W_CBS6412 rna-NM_001178995.3_CBS6412 cds-NP_011030.3_CBS6412 99.8 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005315.1:366000-366626:+ gene-YER104W_CBS6413 rna-NM_001178995.3_CBS6413 cds-NP_011030.3_CBS6413 99.8 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001526.1:364577-365203:+ gene-YER104W_CENPK1137D rna-NM_001178995.3_CENPK1137D cds-NP_011030.3_CENPK1137D 99.8 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005475.1:360529-361155:+ gene-YER104W_EthanolRed rna-NM_001178995.3_EthanolRed cds-NP_011030.3_EthanolRed 99.6 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005539.1:361010-361636:+ gene-YER104W_FaliES1 rna-NM_001178995.3_FaliES1 cds-NP_011030.3_FaliES1 99.6 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000174.1:29904-30530:- gene-YER104W_JAY291 rna-NM_001178995.3_JAY291 cds-NP_011030.3_JAY291 99.5 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005411.1:368111-368737:+ gene-YER104W_MUCL30387 rna-NM_001178995.3_MUCL30387 cds-NP_011030.3_MUCL30387 99.8 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005443.1:363043-363669:+ gene-YER104W_MUCL30388 rna-NM_001178995.3_MUCL30388 cds-NP_011030.3_MUCL30388 99.8 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005283.1:359108-359734:+ gene-YER104W_MUCL39482 rna-NM_001178995.3_MUCL39482 cds-NP_011030.3_MUCL39482 99.8 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005427.1:367600-368226:+ gene-YER104W_MUCL42920 rna-NM_001178995.3_MUCL42920 cds-NP_011030.3_MUCL42920 99.6 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011814.1:366801-367427:+ gene-YER104W_NCIM3186 rna-NM_001178995.3_NCIM3186 cds-NP_011030.3_NCIM3186 99.6 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005267.1:364641-365267:+ gene-YER104W_NCYC1407 rna-NM_001178995.3_NCYC1407 cds-NP_011030.3_NCYC1407 99.8 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994144.1:375181-375807:+ gene-YER104W_PE2H3 rna-NM_001178995.3_PE2H3 cds-NP_011030.3_PE2H3 99.5 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999876.1:365122-365748:+ gene-YER104W_PE2H4 rna-NM_001178995.3_PE2H4 cds-NP_011030.3_PE2H4 99.5 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001137.3:366802-367428:+ gene-YER104W_S288C rna-NM_001178995.3_S288C cds-NP_011030.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000023.1:76421-77047:+ gene-YER104W_SA1 rna-NM_001178995.3_SA1 cds-NP_011030.3_SA1 99.5 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005491.1:361807-362433:+ gene-YER104W_ThermosaccDry rna-NM_001178995.3_ThermosaccDry cds-NP_011030.3_ThermosaccDry 99.6 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005459.1:362869-363495:+ gene-YER104W_VR1 rna-NM_001178995.3_VR1 cds-NP_011030.3_VR1 99.5 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000009.1:358934-359560:+ gene-YER104W_ZTW1 rna-NM_001178995.3_ZTW1 cds-NP_011030.3_ZTW1 99.8 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047491.1:362848-363474:+ gene-YER104W_Sparadoxus rna-NM_001178995.3_Sparadoxus cds-NP_011030.3_Sparadoxus 86.9 100.0 Verified 1 1 1 False True False False False

Additional files