Gene name: RTT103
Reference locus (S288C): YDR289C
Gene biotype: protein_coding
Description: Regulator of Ty1 transposition protein 103; Protein involved in transcription termination by RNA polymerase II; interacts with exonuclease Rat1p and Rai1p; has an RPR domain (carboxy-terminal domain interacting domain); also involved in regulation of Ty1 transposition; Belongs to the UPF0400 (RTT103) family
Top 10 interactors (score): RPO21 (0.999); RAT1 (0.998); PCF11 (0.989); RAI1 (0.988); RTR1 (0.974); SER2 (0.958); RPB2 (0.945); RPB3 (0.944); SSU72 (0.938); THR4 (0.918); TYR1 (0.918); NAB3 (0.917); SEN1 (0.912); NRD1 (0.906); FCP1 (0.905); RPB7 (0.886); RPB10 (0.882); CTK2 (0.879); CTK1 (0.877); RPB4 (0.876)
Homologues (species, bitscore): RPRD1B (Homo sapiens, 67.0); Rprd1b (Mus musculus, 67.0); RPRD1A (Danio rerio, 59.3); rprd1a (Xenopus tropicalis, 64.7); CG15160 (Drosophila melanogaster, 55.1); AT3G26990 (Arabidopsis thaliana, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:990259-991482:- | gene-YDR289C_AKU4011 | rna-NM_001180597.1_AKU4011 | cds-NP_010575.1_AKU4011 | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:140064-141290:+ | gene-YDR289C_BG1 | rna-NM_001180597.1_BG1 | cds-NP_010575.1_BG1 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1017539-1018765:- | gene-YDR289C_Bruggeman | rna-NM_001180597.1_Bruggeman | cds-NP_010575.1_Bruggeman | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1004550-1005776:- | gene-YDR289C_CAT1 | rna-NM_001180597.1_CAT1 | cds-NP_010575.1_CAT1 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:984704-985927:- | gene-YDR289C_CBS1585 | rna-NM_001180597.1_CBS1585 | cds-NP_010575.1_CBS1585 | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1003078-1004304:- | gene-YDR289C_CBS436 | rna-NM_001180597.1_CBS436 | cds-NP_010575.1_CBS436 | 99.6 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:981386-982609:- | gene-YDR289C_CBS6412 | rna-NM_001180597.1_CBS6412 | cds-NP_010575.1_CBS6412 | 99.1 | 99.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1002624-1003847:- | gene-YDR289C_CBS6413 | rna-NM_001180597.1_CBS6413 | cds-NP_010575.1_CBS6413 | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1036926-1038155:- | gene-YDR289C_CENPK1137D | rna-NM_001180597.1_CENPK1137D | cds-NP_010575.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:988798-990021:- | gene-YDR289C_EthanolRed | rna-NM_001180597.1_EthanolRed | cds-NP_010575.1_EthanolRed | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:997000-998223:- | gene-YDR289C_FaliES1 | rna-NM_001180597.1_FaliES1 | cds-NP_010575.1_FaliES1 | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000130.1:14836-16062:- | gene-YDR289C_JAY291 | rna-NM_001180597.1_JAY291 | cds-NP_010575.1_JAY291 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1003055-1004281:- | gene-YDR289C_MUCL30387 | rna-NM_001180597.1_MUCL30387 | cds-NP_010575.1_MUCL30387 | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:990121-991347:- | gene-YDR289C_MUCL30388 | rna-NM_001180597.1_MUCL30388 | cds-NP_010575.1_MUCL30388 | 99.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:976510-977733:- | gene-YDR289C_MUCL39482 | rna-NM_001180597.1_MUCL39482 | cds-NP_010575.1_MUCL39482 | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:916501-917730:- | gene-YDR289C_MUCL42920 | rna-NM_001180597.1_MUCL42920 | cds-NP_010575.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1038203-1039432:- | gene-YDR289C_NCIM3186 | rna-NM_001180597.1_NCIM3186 | cds-NP_010575.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:989801-991024:- | gene-YDR289C_NCYC1407 | rna-NM_001180597.1_NCYC1407 | cds-NP_010575.1_NCYC1407 | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1000808-1002034:- | gene-YDR289C_PE2H3 | rna-NM_001180597.1_PE2H3 | cds-NP_010575.1_PE2H3 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1006393-1007619:- | gene-YDR289C_PE2H4 | rna-NM_001180597.1_PE2H4 | cds-NP_010575.1_PE2H4 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1038280-1039509:- | gene-YDR289C_S288C | rna-NM_001180597.1_S288C | cds-NP_010575.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:15015-16241:- | gene-YDR289C_SA1 | rna-NM_001180597.1_SA1 | cds-NP_010575.1_SA1 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1001285-1002508:- | gene-YDR289C_ThermosaccDry | rna-NM_001180597.1_ThermosaccDry | cds-NP_010575.1_ThermosaccDry | 99.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1017234-1018460:- | gene-YDR289C_VR1 | rna-NM_001180597.1_VR1 | cds-NP_010575.1_VR1 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:45409-46638:- | gene-YDR289C_ZTW1 | rna-NM_001180597.1_ZTW1 | cds-NP_010575.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:996813-998057:- | gene-YDR289C_Sparadoxus | rna-NM_001180597.1_Sparadoxus | cds-NP_010575.1_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |