Gene name: RTT102
Reference locus (S288C): YGR275W
Gene biotype: protein_coding
Description: Regulator of Ty1 transposition protein 102; Component of both the SWI/SNF and RSC chromatin remodeling complexes; suggested role in chromosome maintenance; possible weak regulator of Ty1 transposition; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): ARP7 (0.999); ARP9 (0.999); RSC58 (0.999); NPL6 (0.999); RSC8 (0.999); STH1 (0.999); SWP82 (0.998); SNF2 (0.998); RSC2 (0.998); RSC4 (0.998); SNF6 (0.998); RSC6 (0.998); LDB7 (0.997); HTL1 (0.997); SWI1 (0.997); SWI3 (0.996); RSC30 (0.995); RSC3 (0.995); SNF5 (0.995); RSC9 (0.995)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:1008703-1009176:+ | gene-YGR275W_AKU4011 | rna-NM_001181404.3_AKU4011 | cds-NP_011791.4_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:288711-289184:+ | gene-YGR275W_BG1 | rna-NM_001181404.3_BG1 | cds-NP_011791.4_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:1017226-1017699:+ | gene-YGR275W_Bruggeman | rna-NM_001181404.3_Bruggeman | cds-NP_011791.4_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:1016662-1017135:+ | gene-YGR275W_CAT1 | rna-NM_001181404.3_CAT1 | cds-NP_011791.4_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:1011573-1012046:+ | gene-YGR275W_CBS1585 | rna-NM_001181404.3_CBS1585 | cds-NP_011791.4_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:1015203-1015676:+ | gene-YGR275W_CBS436 | rna-NM_001181404.3_CBS436 | cds-NP_011791.4_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:1002463-1002936:+ | gene-YGR275W_CBS6412 | rna-NM_001181404.3_CBS6412 | cds-NP_011791.4_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:1008518-1008991:+ | gene-YGR275W_CBS6413 | rna-NM_001181404.3_CBS6413 | cds-NP_011791.4_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:1042946-1043419:+ | gene-YGR275W_CENPK1137D | rna-NM_001181404.3_CENPK1137D | cds-NP_011791.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:996552-997025:+ | gene-YGR275W_EthanolRed | rna-NM_001181404.3_EthanolRed | cds-NP_011791.4_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:1001358-1001831:+ | gene-YGR275W_FaliES1 | rna-NM_001181404.3_FaliES1 | cds-NP_011791.4_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:28479-28952:- | gene-YGR275W_JAY291 | rna-NM_001181404.3_JAY291 | cds-NP_011791.4_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:1014967-1015440:+ | gene-YGR275W_MUCL30387 | rna-NM_001181404.3_MUCL30387 | cds-NP_011791.4_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:1013099-1013572:+ | gene-YGR275W_MUCL30388 | rna-NM_001181404.3_MUCL30388 | cds-NP_011791.4_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:1006679-1007152:+ | gene-YGR275W_MUCL39482 | rna-NM_001181404.3_MUCL39482 | cds-NP_011791.4_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:1024552-1025025:+ | gene-YGR275W_MUCL42920 | rna-NM_001181404.3_MUCL42920 | cds-NP_011791.4_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:1043276-1043749:+ | gene-YGR275W_NCIM3186 | rna-NM_001181404.3_NCIM3186 | cds-NP_011791.4_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:1002308-1002781:+ | gene-YGR275W_NCYC1407 | rna-NM_001181404.3_NCYC1407 | cds-NP_011791.4_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:1027503-1027976:+ | gene-YGR275W_PE2H3 | rna-NM_001181404.3_PE2H3 | cds-NP_011791.4_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:1032342-1032815:+ | gene-YGR275W_PE2H4 | rna-NM_001181404.3_PE2H4 | cds-NP_011791.4_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:1043276-1043749:+ | gene-YGR275W_S288C | rna-NM_001181404.3_S288C | cds-NP_011791.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000063.1:41494-41967:+ | gene-YGR275W_SA1 | rna-NM_001181404.3_SA1 | cds-NP_011791.4_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:1021878-1022351:+ | gene-YGR275W_ThermosaccDry | rna-NM_001181404.3_ThermosaccDry | cds-NP_011791.4_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1127663-1128136:+ | gene-YGR275W_VR1 | rna-NM_001181404.3_VR1 | cds-NP_011791.4_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:323289-323762:+ | gene-YGR275W_ZTW1 | rna-NM_001181404.3_ZTW1 | cds-NP_011791.4_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:1013976-1014449:+ | gene-YGR275W_Sparadoxus | rna-NM_001181404.3_Sparadoxus | cds-NP_011791.4_Sparadoxus | 88.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |