Gene name: RTT101
Reference locus (S288C): YJL047C
Gene biotype: protein_coding
Description: Cullin-8; Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex; role in anaphase progression; required for recovery after DSB repair; implicated in Mms22-dependent DNA repair; involved with Mms1p in nonfunctional rRNA decay; modified by the ubiquitin-like protein, Rub1p
Top 10 interactors (score): MMS22 (0.999); HRT1 (0.999); MMS1 (0.999); RTT107 (0.999); SKP1 (0.995); UBC12 (0.975); RRI1 (0.974); RTT109 (0.942); DCN1 (0.914); CDC34 (0.91); HHT2 (0.909); UBA3 (0.907); RUB1 (0.902); ULA1 (0.9); CRT10 (0.89); APC11 (0.889); CTF4 (0.881); ASF1 (0.845); HST3 (0.844); RRM3 (0.835)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:332390-334918:- | gene-YJL047C_AKU4011 | rna-NM_001181480.3_AKU4011 | cds-NP_012488.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:278875-281403:+ | gene-YJL047C_BG1 | rna-NM_001181480.3_BG1 | cds-NP_012488.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:344969-347498:- | gene-YJL047C_Bruggeman | rna-NM_001181480.3_Bruggeman | cds-NP_012488.3_Bruggeman | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:350205-352733:- | gene-YJL047C_CAT1 | rna-NM_001181480.3_CAT1 | cds-NP_012488.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:344044-346572:- | gene-YJL047C_CBS1585 | rna-NM_001181480.3_CBS1585 | cds-NP_012488.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:362095-364623:- | gene-YJL047C_CBS436 | rna-NM_001181480.3_CBS436 | cds-NP_012488.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:333149-335677:- | gene-YJL047C_CBS6412 | rna-NM_001181480.3_CBS6412 | cds-NP_012488.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:334496-337024:- | gene-YJL047C_CBS6413 | rna-NM_001181480.3_CBS6413 | cds-NP_012488.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:332044-334572:- | gene-YJL047C_CENPK1137D | rna-NM_001181480.3_CENPK1137D | cds-NP_012488.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:336228-338756:- | gene-YJL047C_EthanolRed | rna-NM_001181480.3_EthanolRed | cds-NP_012488.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:347802-350330:- | gene-YJL047C_FaliES1 | rna-NM_001181480.3_FaliES1 | cds-NP_012488.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000210.1:2566-5094:+ | gene-YJL047C_JAY291 | rna-NM_001181480.3_JAY291 | cds-NP_012488.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:346124-348652:- | gene-YJL047C_MUCL30387 | rna-NM_001181480.3_MUCL30387 | cds-NP_012488.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:342164-344693:- | gene-YJL047C_MUCL30388 | rna-NM_001181480.3_MUCL30388 | cds-NP_012488.3_MUCL30388 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:336798-339326:- | gene-YJL047C_MUCL39482 | rna-NM_001181480.3_MUCL39482 | cds-NP_012488.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:343492-346020:- | gene-YJL047C_MUCL42920 | rna-NM_001181480.3_MUCL42920 | cds-NP_012488.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:349559-352087:- | gene-YJL047C_NCIM3186 | rna-NM_001181480.3_NCIM3186 | cds-NP_012488.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:335494-338022:- | gene-YJL047C_NCYC1407 | rna-NM_001181480.3_NCYC1407 | cds-NP_012488.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:347892-350420:- | gene-YJL047C_PE2H3 | rna-NM_001181480.3_PE2H3 | cds-NP_012488.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:347537-350065:- | gene-YJL047C_PE2H4 | rna-NM_001181480.3_PE2H4 | cds-NP_012488.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:349580-352108:- | gene-YJL047C_S288C | rna-NM_001181480.3_S288C | cds-NP_012488.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:145453-147981:- | gene-YJL047C_SA1 | rna-NM_001181480.3_SA1 | cds-NP_012488.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:341215-343743:- | gene-YJL047C_ThermosaccDry | rna-NM_001181480.3_ThermosaccDry | cds-NP_012488.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:343707-346235:- | gene-YJL047C_VR1 | rna-NM_001181480.3_VR1 | cds-NP_012488.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:322592-325120:- | gene-YJL047C_ZTW1 | rna-NM_001181480.3_ZTW1 | cds-NP_012488.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:346663-349191:- | gene-YJL047C_Sparadoxus | rna-NM_001181480.3_Sparadoxus | cds-NP_012488.3_Sparadoxus | 87.7 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |