Gene name: RTT10
Reference locus (S288C): YPL183C
Gene biotype: protein_coding
Description: Regulator of Ty1 transposition protein 10; WD40 domain-containing protein involved in endosomal recycling; forms a complex with Rrt2p that functions in the retromer-mediated pathway for recycling internalized cell-surface proteins; interacts with Trm7p for 2'-O-methylation of N34 of substrate tRNAs; has a role in regulation of Ty1 transposition; human ortholog is WDR6
Top 10 interactors (score): TRM7 (0.999); TRM82 (0.99); TRM732 (0.984); SPB1 (0.96); RRT2 (0.944); NOG1 (0.942); TRM11 (0.932); PWP2 (0.915); TRM1 (0.904); TRM8 (0.891); RRP12 (0.886); UTP13 (0.876); ARX1 (0.868); UTP8 (0.859); NOC2 (0.858); NOG2 (0.853); PWP1 (0.85); GCD10 (0.849); NCL1 (0.84); DHR2 (0.835)
Homologues (species, bitscore): WDR6 (Homo sapiens, 126.7); Wdr6 (Mus musculus, 126.7); wdr6 (Danio rerio, 128.6); wdr6 (Xenopus tropicalis, 188.0); CG33172 (Drosophila melanogaster, 72.8); Y53C12B.1 (Caenorhabditis elegans, 57.4); AT4G01860 (Arabidopsis thaliana, 99.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:177498-180539:- | gene-YPL183C_AKU4011 | rna-NM_001183997.1_AKU4011 | cds-NP_015142.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:383109-386150:- | gene-YPL183C_BG1 | rna-NM_001183997.1_BG1 | cds-NP_015142.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:203344-206385:- | gene-YPL183C_Bruggeman | rna-NM_001183997.1_Bruggeman | cds-NP_015142.1_Bruggeman | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:199686-202727:- | gene-YPL183C_CAT1 | rna-NM_001183997.1_CAT1 | cds-NP_015142.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:181564-184605:- | gene-YPL183C_CBS1585 | rna-NM_001183997.1_CBS1585 | cds-NP_015142.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:196220-199261:- | gene-YPL183C_CBS436 | rna-NM_001183997.1_CBS436 | cds-NP_015142.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:186233-189274:- | gene-YPL183C_CBS6412 | rna-NM_001183997.1_CBS6412 | cds-NP_015142.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:177716-180757:- | gene-YPL183C_CBS6413 | rna-NM_001183997.1_CBS6413 | cds-NP_015142.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:199377-202418:- | gene-YPL183C_CENPK1137D | rna-NM_001183997.1_CENPK1137D | cds-NP_015142.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:176240-179281:- | gene-YPL183C_EthanolRed | rna-NM_001183997.1_EthanolRed | cds-NP_015142.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:183832-186873:- | gene-YPL183C_FaliES1 | rna-NM_001183997.1_FaliES1 | cds-NP_015142.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:179028-182069:+ | gene-YPL183C_JAY291 | rna-NM_001183997.1_JAY291 | cds-NP_015142.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:194725-197766:- | gene-YPL183C_MUCL30387 | rna-NM_001183997.1_MUCL30387 | cds-NP_015142.1_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:192745-195786:- | gene-YPL183C_MUCL30388 | rna-NM_001183997.1_MUCL30388 | cds-NP_015142.1_MUCL30388 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:174893-177934:- | gene-YPL183C_MUCL39482 | rna-NM_001183997.1_MUCL39482 | cds-NP_015142.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:231572-234613:- | gene-YPL183C_MUCL42920 | rna-NM_001183997.1_MUCL42920 | cds-NP_015142.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:199478-202519:- | gene-YPL183C_NCIM3186 | rna-NM_001183997.1_NCIM3186 | cds-NP_015142.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:181345-184386:- | gene-YPL183C_NCYC1407 | rna-NM_001183997.1_NCYC1407 | cds-NP_015142.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:188787-191828:- | gene-YPL183C_PE2H3 | rna-NM_001183997.1_PE2H3 | cds-NP_015142.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:188430-191471:- | gene-YPL183C_PE2H4 | rna-NM_001183997.1_PE2H4 | cds-NP_015142.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:199495-202536:- | gene-YPL183C_S288C | rna-NM_001183997.1_S288C | cds-NP_015142.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:170810-173851:+ | gene-YPL183C_SA1 | rna-NM_001183997.1_SA1 | cds-NP_015142.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:183630-186671:- | gene-YPL183C_ThermosaccDry | rna-NM_001183997.1_ThermosaccDry | cds-NP_015142.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:198560-201601:- | gene-YPL183C_VR1 | rna-NM_001183997.1_VR1 | cds-NP_015142.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:182959-186000:- | gene-YPL183C_ZTW1 | rna-NM_001183997.1_ZTW1 | cds-NP_015142.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:184570-187611:- | gene-YPL183C_Sparadoxus | rna-NM_001183997.1_Sparadoxus | cds-NP_015142.1_Sparadoxus | 87.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |