Gene name: RTR2
Reference locus (S288C): YDR066C
Gene biotype: protein_coding
Description: RNA polymerase II subunit B1 CTD phosphatase RTR2; Protein of unknown function; exhibits genetic interactions with Rtr1p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YDR066C is not an essential gene; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; RTR2 has a paralog, RTR1, that arose from the whole genome duplication; Belongs to the RPAP2 family
Top 10 interactors (score): OCA6 (0.968); RRG1 (0.952); PET100 (0.902); SHU2 (0.863); STN1 (0.858); DET1 (0.856); RPC11 (0.852); SSU72 (0.839); YDR053W (0.838); TGL2 (0.827); EMC10 (0.809); TVP23 (0.802); AIM7 (0.794); VMS1 (0.793); CDC34 (0.789); FCP1 (0.788); YDR090C (0.781); DOS2 (0.77); HEM12 (0.768); RTF1 (0.759)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:559452-560042:- | gene-YDR066C_AKU4011 | rna-NM_001180374.1_AKU4011 | cds-NP_010351.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:565351-565941:+ | gene-YDR066C_BG1 | rna-NM_001180374.1_BG1 | cds-NP_010351.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:591754-592344:- | gene-YDR066C_Bruggeman | rna-NM_001180374.1_Bruggeman | cds-NP_010351.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:575337-575927:- | gene-YDR066C_CAT1 | rna-NM_001180374.1_CAT1 | cds-NP_010351.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:550405-550995:- | gene-YDR066C_CBS1585 | rna-NM_001180374.1_CBS1585 | cds-NP_010351.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:575568-576158:- | gene-YDR066C_CBS436 | rna-NM_001180374.1_CBS436 | cds-NP_010351.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:546817-547407:- | gene-YDR066C_CBS6412 | rna-NM_001180374.1_CBS6412 | cds-NP_010351.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:575483-576073:- | gene-YDR066C_CBS6413 | rna-NM_001180374.1_CBS6413 | cds-NP_010351.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:580873-581463:- | gene-YDR066C_CENPK1137D | rna-NM_001180374.1_CENPK1137D | cds-NP_010351.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:561269-561859:- | gene-YDR066C_EthanolRed | rna-NM_001180374.1_EthanolRed | cds-NP_010351.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:567716-568306:- | gene-YDR066C_FaliES1 | rna-NM_001180374.1_FaliES1 | cds-NP_010351.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:62502-63092:+ | gene-YDR066C_JAY291 | rna-NM_001180374.1_JAY291 | cds-NP_010351.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:576447-577037:- | gene-YDR066C_MUCL30387 | rna-NM_001180374.1_MUCL30387 | cds-NP_010351.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:566837-567427:- | gene-YDR066C_MUCL30388 | rna-NM_001180374.1_MUCL30388 | cds-NP_010351.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:551776-552366:- | gene-YDR066C_MUCL39482 | rna-NM_001180374.1_MUCL39482 | cds-NP_010351.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:482248-482838:- | gene-YDR066C_MUCL42920 | rna-NM_001180374.1_MUCL42920 | cds-NP_010351.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:581831-582421:- | gene-YDR066C_NCIM3186 | rna-NM_001180374.1_NCIM3186 | cds-NP_010351.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:550708-551298:- | gene-YDR066C_NCYC1407 | rna-NM_001180374.1_NCYC1407 | cds-NP_010351.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:570342-570932:- | gene-YDR066C_PE2H3 | rna-NM_001180374.1_PE2H3 | cds-NP_010351.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:569647-570237:- | gene-YDR066C_PE2H4 | rna-NM_001180374.1_PE2H4 | cds-NP_010351.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:581908-582498:- | gene-YDR066C_S288C | rna-NM_001180374.1_S288C | cds-NP_010351.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:62994-63584:+ | gene-YDR066C_SA1 | rna-NM_001180374.1_SA1 | cds-NP_010351.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:567408-567998:- | gene-YDR066C_ThermosaccDry | rna-NM_001180374.1_ThermosaccDry | cds-NP_010351.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:580138-580728:- | gene-YDR066C_VR1 | rna-NM_001180374.1_VR1 | cds-NP_010351.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:565056-565646:- | gene-YDR066C_ZTW1 | rna-NM_001180374.1_ZTW1 | cds-NP_010351.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:569954-570544:- | gene-YDR066C_Sparadoxus | rna-NM_001180374.1_Sparadoxus | cds-NP_010351.1_Sparadoxus | 82.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |