Gene name: RTP1
Reference locus (S288C): YMR185W
Gene biotype: protein_coding
Description: RNA polymerase II assembly factor RTP1; Protein required for the nuclear import and biogenesis of RNA pol II; conflicting evidence on whether null mutant is viable with elongated buds, or inviable; interacts with Rpb2, Rpb3, Nup116p, Nup100p and components of the R2TP complex (Rvb1p, Rvb2p, Pih1p); similar to human TMCO7 gene
Top 10 interactors (score): NAT3 (0.962); YAR1 (0.699); RPN2 (0.681); BLM10 (0.641); RPN1 (0.615); UTP4 (0.589); PRE2 (0.571); RPN5 (0.55); ENP2 (0.54); TPD3 (0.48); DHR2 (0.478); RBK1 (0.465); SGD1 (0.461); RPT6 (0.453); RVB2 (0.451); UTP13 (0.4); IFH1 (0.4)
Homologues (species, bitscore): TANGO6 (Homo sapiens, 73.6); Tango6 (Mus musculus, 64.7); tango6 (Danio rerio, 52.0); tango6 (Xenopus tropicalis, 65.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:668956-671901:+ | gene-YMR185W_AKU4011 | rna-NM_001182691.1_AKU4011 | cds-NP_013910.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:1143-4088:- | gene-YMR185W_BG1 | rna-NM_001182691.1_BG1 | cds-NP_013910.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:613172-616117:+ | gene-YMR185W_Bruggeman | rna-NM_001182691.1_Bruggeman | cds-NP_013910.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:615917-618862:+ | gene-YMR185W_CAT1 | rna-NM_001182691.1_CAT1 | cds-NP_013910.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:601212-604157:+ | gene-YMR185W_CBS1585 | rna-NM_001182691.1_CBS1585 | cds-NP_013910.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:605476-608421:+ | gene-YMR185W_CBS436 | rna-NM_001182691.1_CBS436 | cds-NP_013910.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:712771-715716:+ | gene-YMR185W_CBS6412 | rna-NM_001182691.1_CBS6412 | cds-NP_013910.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:600361-603306:+ | gene-YMR185W_CBS6413 | rna-NM_001182691.1_CBS6413 | cds-NP_013910.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:623604-626549:+ | gene-YMR185W_CENPK1137D | rna-NM_001182691.1_CENPK1137D | cds-NP_013910.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:661401-664346:+ | gene-YMR185W_EthanolRed | rna-NM_001182691.1_EthanolRed | cds-NP_013910.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:607057-610002:+ | gene-YMR185W_FaliES1 | rna-NM_001182691.1_FaliES1 | cds-NP_013910.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000265.1:1058-4003:- | gene-YMR185W_JAY291 | rna-NM_001182691.1_JAY291 | cds-NP_013910.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:606718-609663:+ | gene-YMR185W_MUCL30387 | rna-NM_001182691.1_MUCL30387 | cds-NP_013910.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:613498-616443:+ | gene-YMR185W_MUCL30388 | rna-NM_001182691.1_MUCL30388 | cds-NP_013910.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:602284-605229:+ | gene-YMR185W_MUCL39482 | rna-NM_001182691.1_MUCL39482 | cds-NP_013910.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:609617-612562:+ | gene-YMR185W_MUCL42920 | rna-NM_001182691.1_MUCL42920 | cds-NP_013910.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:628979-631924:+ | gene-YMR185W_NCIM3186 | rna-NM_001182691.1_NCIM3186 | cds-NP_013910.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:601936-604881:+ | gene-YMR185W_NCYC1407 | rna-NM_001182691.1_NCYC1407 | cds-NP_013910.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:611805-614750:+ | gene-YMR185W_PE2H3 | rna-NM_001182691.1_PE2H3 | cds-NP_013910.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:612791-615736:+ | gene-YMR185W_PE2H4 | rna-NM_001182691.1_PE2H4 | cds-NP_013910.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:629025-631970:+ | gene-YMR185W_S288C | rna-NM_001182691.1_S288C | cds-NP_013910.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:176145-179090:- | gene-YMR185W_SA1 | rna-NM_001182691.1_SA1 | cds-NP_013910.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:603183-606128:+ | gene-YMR185W_ThermosaccDry | rna-NM_001182691.1_ThermosaccDry | cds-NP_013910.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:616353-619298:+ | gene-YMR185W_VR1 | rna-NM_001182691.1_VR1 | cds-NP_013910.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:18972-21917:+ | gene-YMR185W_ZTW1 | rna-NM_001182691.1_ZTW1 | cds-NP_013910.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:621112-624042:+ | gene-YMR185W_Sparadoxus | rna-NM_001182691.1_Sparadoxus | cds-NP_013910.1_Sparadoxus | 86.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |