Gene name: RTK1
Reference locus (S288C): YDL025C
Gene biotype: protein_coding
Description: Probable serine/threonine-protein kinase RTK1; Putative protein kinase, potentially phosphorylated by Cdc28p; interacts with ribosome biogenesis factors, Cka2, Gus1 and Arc1; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): YGR016W (0.935); MEC1 (0.875); YDR239C (0.869); AIM2 (0.817); DPB11 (0.772); CAF120 (0.768); TDA3 (0.763); ACK1 (0.753); TEL1 (0.748); TOF1 (0.742); CSM3 (0.711); CDC45 (0.698); RAD24 (0.697); RAD51 (0.692); RAD17 (0.637); RPN6 (0.631); PKP2 (0.626); MIH1 (0.612); ARR2 (0.612); YCH1 (0.612)
Homologues (species, bitscore): CHEK1 (Homo sapiens, 122.1); Chek1 (Mus musculus, 117.5); mark4a (Danio rerio, 117.9); chek1 (Xenopus tropicalis, 122.5); KP78b (Drosophila melanogaster, 115.5); kin-33 (Caenorhabditis elegans, 117.1); CIPK25 (Arabidopsis thaliana, 117.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:391418-393280:- | gene-YDL025C_AKU4011 | rna-NM_001180084.1_AKU4011 | cds-NP_010259.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:156586-158448:+ | gene-YDL025C_BG1 | rna-NM_001180084.1_BG1 | cds-NP_010259.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:410085-411947:- | gene-YDL025C_Bruggeman | rna-NM_001180084.1_Bruggeman | cds-NP_010259.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:404629-406491:- | gene-YDL025C_CAT1 | rna-NM_001180084.1_CAT1 | cds-NP_010259.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:387834-389696:- | gene-YDL025C_CBS1585 | rna-NM_001180084.1_CBS1585 | cds-NP_010259.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:405368-407230:- | gene-YDL025C_CBS436 | rna-NM_001180084.1_CBS436 | cds-NP_010259.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:385630-387492:- | gene-YDL025C_CBS6412 | rna-NM_001180084.1_CBS6412 | cds-NP_010259.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:407595-409457:- | gene-YDL025C_CBS6413 | rna-NM_001180084.1_CBS6413 | cds-NP_010259.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:404204-406066:- | gene-YDL025C_CENPK1137D | rna-NM_001180084.1_CENPK1137D | cds-NP_010259.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:400250-402112:- | gene-YDL025C_EthanolRed | rna-NM_001180084.1_EthanolRed | cds-NP_010259.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:406442-408304:- | gene-YDL025C_FaliES1 | rna-NM_001180084.1_FaliES1 | cds-NP_010259.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000370.1:20987-22849:- | gene-YDL025C_JAY291 | rna-NM_001180084.1_JAY291 | cds-NP_010259.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:405816-407678:- | gene-YDL025C_MUCL30387 | rna-NM_001180084.1_MUCL30387 | cds-NP_010259.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:396330-398192:- | gene-YDL025C_MUCL30388 | rna-NM_001180084.1_MUCL30388 | cds-NP_010259.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:389014-390876:- | gene-YDL025C_MUCL39482 | rna-NM_001180084.1_MUCL39482 | cds-NP_010259.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:311376-313238:- | gene-YDL025C_MUCL42920 | rna-NM_001180084.1_MUCL42920 | cds-NP_010259.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:405267-407129:- | gene-YDL025C_NCIM3186 | rna-NM_001180084.1_NCIM3186 | cds-NP_010259.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:388927-390789:- | gene-YDL025C_NCYC1407 | rna-NM_001180084.1_NCYC1407 | cds-NP_010259.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:396469-398331:- | gene-YDL025C_PE2H3 | rna-NM_001180084.1_PE2H3 | cds-NP_010259.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:395827-397689:- | gene-YDL025C_PE2H4 | rna-NM_001180084.1_PE2H4 | cds-NP_010259.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:405344-407206:- | gene-YDL025C_S288C | rna-NM_001180084.1_S288C | cds-NP_010259.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:27730-29592:+ | gene-YDL025C_SA1 | rna-NM_001180084.1_SA1 | cds-NP_010259.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:405902-407764:- | gene-YDL025C_ThermosaccDry | rna-NM_001180084.1_ThermosaccDry | cds-NP_010259.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:408963-410825:- | gene-YDL025C_VR1 | rna-NM_001180084.1_VR1 | cds-NP_010259.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:403802-405664:- | gene-YDL025C_ZTW1 | rna-NM_001180084.1_ZTW1 | cds-NP_010259.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:408038-409909:- | gene-YDL025C_Sparadoxus | rna-NM_001180084.1_Sparadoxus | cds-NP_010259.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |