Gene name: RTG3
Reference locus (S288C): YBL103C
Gene biotype: protein_coding
Description: Retrograde regulation protein 3; bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways; forms a complex with another bHLH/Zip protein, Rtg1p, to activate the pathways; target of Hog1p
Top 10 interactors (score): RTG1 (0.999); MKS1 (0.95); RTG2 (0.943); BMH1 (0.885); CIT2 (0.863); BMH2 (0.845); GLN3 (0.842); TOR1 (0.828); ATG21 (0.821); SCH9 (0.808); LST8 (0.806); HOG1 (0.802); SPF1 (0.79); MSN4 (0.788); DAL82 (0.771); RAS2 (0.764); MSN2 (0.764); PTC6 (0.757); GCN4 (0.738); TYE7 (0.733)
Homologues (species, bitscore): MITF (Homo sapiens, 60.1); Tfec (Mus musculus, 55.1); tfe3b (Danio rerio, 59.7); tfeb (Xenopus tropicalis, 54.7); Mitf (Drosophila melanogaster, 67.8); hlh-30 (Caenorhabditis elegans, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:21973-23433:- | gene-YBL103C_AKU4011 | rna-NM_001178343.1_AKU4011 | cds-NP_009447.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:12697-14157:- | gene-YBL103C_BG1 | rna-NM_001178343.1_BG1 | cds-NP_009447.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:22357-23817:- | gene-YBL103C_Bruggeman | rna-NM_001178343.1_Bruggeman | cds-NP_009447.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:24563-26023:- | gene-YBL103C_CAT1 | rna-NM_001178343.1_CAT1 | cds-NP_009447.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:14044-15504:- | gene-YBL103C_CBS1585 | rna-NM_001178343.1_CBS1585 | cds-NP_009447.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:16996-18456:- | gene-YBL103C_CBS436 | rna-NM_001178343.1_CBS436 | cds-NP_009447.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:13832-15292:- | gene-YBL103C_CBS6412 | rna-NM_001178343.1_CBS6412 | cds-NP_009447.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:20174-21634:- | gene-YBL103C_CBS6413 | rna-NM_001178343.1_CBS6413 | cds-NP_009447.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:16008-17468:- | gene-YBL103C_CENPK1137D | rna-NM_001178343.1_CENPK1137D | cds-NP_009447.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:36216-37676:- | gene-YBL103C_EthanolRed | rna-NM_001178343.1_EthanolRed | cds-NP_009447.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:36348-37808:- | gene-YBL103C_FaliES1 | rna-NM_001178343.1_FaliES1 | cds-NP_009447.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000184.1:13390-14850:- | gene-YBL103C_JAY291 | rna-NM_001178343.1_JAY291 | cds-NP_009447.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:21500-22960:- | gene-YBL103C_MUCL30387 | rna-NM_001178343.1_MUCL30387 | cds-NP_009447.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:21602-23062:- | gene-YBL103C_MUCL30388 | rna-NM_001178343.1_MUCL30388 | cds-NP_009447.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:14200-15660:- | gene-YBL103C_MUCL39482 | rna-NM_001178343.1_MUCL39482 | cds-NP_009447.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:20839-22299:- | gene-YBL103C_MUCL42920 | rna-NM_001178343.1_MUCL42920 | cds-NP_009447.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:21873-23333:- | gene-YBL103C_NCIM3186 | rna-NM_001178343.1_NCIM3186 | cds-NP_009447.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:15872-17332:- | gene-YBL103C_NCYC1407 | rna-NM_001178343.1_NCYC1407 | cds-NP_009447.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:22180-23640:- | gene-YBL103C_PE2H3 | rna-NM_001178343.1_PE2H3 | cds-NP_009447.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:19812-21272:- | gene-YBL103C_PE2H4 | rna-NM_001178343.1_PE2H4 | cds-NP_009447.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:22076-23536:- | gene-YBL103C_S288C | rna-NM_001178343.1_S288C | cds-NP_009447.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:12495-13955:- | gene-YBL103C_SA1 | rna-NM_001178343.1_SA1 | cds-NP_009447.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:36310-37770:- | gene-YBL103C_ThermosaccDry | rna-NM_001178343.1_ThermosaccDry | cds-NP_009447.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:18525-19985:- | gene-YBL103C_VR1 | rna-NM_001178343.1_VR1 | cds-NP_009447.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:13535-14995:- | gene-YBL103C_ZTW1 | rna-NM_001178343.1_ZTW1 | cds-NP_009447.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:48478-49934:- | gene-YBL103C_Sparadoxus | rna-NM_001178343.1_Sparadoxus | cds-NP_009447.1_Sparadoxus | 91.7 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |