Gene name: RTG2
Reference locus (S288C): YGL252C
Gene biotype: protein_coding
Description: Retrograde regulation protein 2; Sensor of mitochondrial dysfunction; regulates the subcellular location of Rtg1p and Rtg3p, transcriptional activators of the retrograde (RTG) and TOR pathways; Rtg2p is inhibited by the phosphorylated form of Mks1p
Top 10 interactors (score): MKS1 (0.996); RTG1 (0.975); BMH1 (0.965); GCN5 (0.955); RTG3 (0.943); SPT7 (0.937); BMH2 (0.936); SGF73 (0.928); ADA2 (0.928); UBP8 (0.928); NGG1 (0.928); CHD1 (0.926); SPT8 (0.925); CTA1 (0.916); SGF11 (0.9); SPT20 (0.9); TRA1 (0.9); TAF12 (0.9); SUS1 (0.9); TAF10 (0.9)
Homologues (species, bitscore): AT1G09195 (Arabidopsis thaliana, 60.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:27242-29008:- | gene-YGL252C_AKU4011 | rna-NM_001181118.1_AKU4011 | cds-NP_011262.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:19282-21048:- | gene-YGL252C_BG1 | rna-NM_001181118.1_BG1 | cds-NP_011262.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:27598-29364:- | gene-YGL252C_Bruggeman | rna-NM_001181118.1_Bruggeman | cds-NP_011262.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:25670-27436:- | gene-YGL252C_CAT1 | rna-NM_001181118.1_CAT1 | cds-NP_011262.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:31530-33296:- | gene-YGL252C_CBS1585 | rna-NM_001181118.1_CBS1585 | cds-NP_011262.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:26259-28025:- | gene-YGL252C_CBS436 | rna-NM_001181118.1_CBS436 | cds-NP_011262.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:19098-20864:- | gene-YGL252C_CBS6412 | rna-NM_001181118.1_CBS6412 | cds-NP_011262.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:25386-27152:- | gene-YGL252C_CBS6413 | rna-NM_001181118.1_CBS6413 | cds-NP_011262.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:25380-27146:- | gene-YGL252C_CENPK1137D | rna-NM_001181118.1_CENPK1137D | cds-NP_011262.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:18519-20285:- | gene-YGL252C_EthanolRed | rna-NM_001181118.1_EthanolRed | cds-NP_011262.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:18880-20646:- | gene-YGL252C_FaliES1 | rna-NM_001181118.1_FaliES1 | cds-NP_011262.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000079.1:46434-48200:+ | gene-YGL252C_JAY291 | rna-NM_001181118.1_JAY291 | cds-NP_011262.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:27534-29300:- | gene-YGL252C_MUCL30387 | rna-NM_001181118.1_MUCL30387 | cds-NP_011262.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:29688-31454:- | gene-YGL252C_MUCL30388 | rna-NM_001181118.1_MUCL30388 | cds-NP_011262.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:28127-29893:- | gene-YGL252C_MUCL39482 | rna-NM_001181118.1_MUCL39482 | cds-NP_011262.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:31021-32787:- | gene-YGL252C_MUCL42920 | rna-NM_001181118.1_MUCL42920 | cds-NP_011262.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:25718-27484:- | gene-YGL252C_NCIM3186 | rna-NM_001181118.1_NCIM3186 | cds-NP_011262.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:19891-21657:- | gene-YGL252C_NCYC1407 | rna-NM_001181118.1_NCYC1407 | cds-NP_011262.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:21747-23513:- | gene-YGL252C_PE2H3 | rna-NM_001181118.1_PE2H3 | cds-NP_011262.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:21295-23061:- | gene-YGL252C_PE2H4 | rna-NM_001181118.1_PE2H4 | cds-NP_011262.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:25718-27484:- | gene-YGL252C_S288C | rna-NM_001181118.1_S288C | cds-NP_011262.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:347850-349616:+ | gene-YGL252C_SA1 | rna-NM_001181118.1_SA1 | cds-NP_011262.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:19195-20961:- | gene-YGL252C_ThermosaccDry | rna-NM_001181118.1_ThermosaccDry | cds-NP_011262.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:26185-27951:- | gene-YGL252C_VR1 | rna-NM_001181118.1_VR1 | cds-NP_011262.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:18269-20035:- | gene-YGL252C_ZTW1 | rna-NM_001181118.1_ZTW1 | cds-NP_011262.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:26932-28698:- | gene-YGL252C_Sparadoxus | rna-NM_001181118.1_Sparadoxus | cds-NP_011262.1_Sparadoxus | 92.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |