Gene name: RTG1
Reference locus (S288C): YOL067C
Gene biotype: protein_coding
Description: Retrograde regulation protein 1; Transcription factor (bHLH) involved in interorganelle communication; contributes to communication between mitochondria, peroxisomes, and nucleus; target of Hog1p; activated in stochastic pulses of nuclear localization
Top 10 interactors (score): RTG3 (0.999); RTG2 (0.975); MKS1 (0.955); CIT2 (0.892); LST8 (0.815); SPF1 (0.784); CTA1 (0.78); BMH1 (0.777); GLN3 (0.775); IDH1 (0.736); MSN2 (0.716); ACO1 (0.716); IDH2 (0.715); TOR1 (0.713); CIT1 (0.708); TYE7 (0.706); TAP42 (0.705); HOG1 (0.703); MSN4 (0.699); SCH9 (0.696)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:185639-186172:- | gene-YOL067C_AKU4011 | rna-NM_001183322.1_AKU4011 | cds-NP_014574.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:1592-2125:- | gene-YOL067C_BG1 | rna-NM_001183322.1_BG1 | cds-NP_014574.1_BG1 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:187309-187842:- | gene-YOL067C_Bruggeman | rna-NM_001183322.1_Bruggeman | cds-NP_014574.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:186821-187354:- | gene-YOL067C_CAT1 | rna-NM_001183322.1_CAT1 | cds-NP_014574.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:180030-180563:- | gene-YOL067C_CBS1585 | rna-NM_001183322.1_CBS1585 | cds-NP_014574.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:185189-185722:- | gene-YOL067C_CBS436 | rna-NM_001183322.1_CBS436 | cds-NP_014574.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:179959-180492:- | gene-YOL067C_CBS6412 | rna-NM_001183322.1_CBS6412 | cds-NP_014574.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:186895-187428:- | gene-YOL067C_CBS6413 | rna-NM_001183322.1_CBS6413 | cds-NP_014574.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:201735-202268:- | gene-YOL067C_CENPK1137D | rna-NM_001183322.1_CENPK1137D | cds-NP_014574.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:182739-183272:- | gene-YOL067C_EthanolRed | rna-NM_001183322.1_EthanolRed | cds-NP_014574.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:185282-185815:- | gene-YOL067C_FaliES1 | rna-NM_001183322.1_FaliES1 | cds-NP_014574.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:79742-80275:+ | gene-YOL067C_JAY291 | rna-NM_001183322.1_JAY291 | cds-NP_014574.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:191073-191606:- | gene-YOL067C_MUCL30387 | rna-NM_001183322.1_MUCL30387 | cds-NP_014574.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:194758-195291:- | gene-YOL067C_MUCL30388 | rna-NM_001183322.1_MUCL30388 | cds-NP_014574.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:187950-188483:- | gene-YOL067C_MUCL39482 | rna-NM_001183322.1_MUCL39482 | cds-NP_014574.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:203431-203964:- | gene-YOL067C_MUCL42920 | rna-NM_001183322.1_MUCL42920 | cds-NP_014574.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:201874-202407:- | gene-YOL067C_NCIM3186 | rna-NM_001183322.1_NCIM3186 | cds-NP_014574.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:194567-195100:- | gene-YOL067C_NCYC1407 | rna-NM_001183322.1_NCYC1407 | cds-NP_014574.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:177573-178106:- | gene-YOL067C_PE2H3 | rna-NM_001183322.1_PE2H3 | cds-NP_014574.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:188563-189096:- | gene-YOL067C_PE2H4 | rna-NM_001183322.1_PE2H4 | cds-NP_014574.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:201985-202518:- | gene-YOL067C_S288C | rna-NM_001183322.1_S288C | cds-NP_014574.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:169873-170406:- | gene-YOL067C_SA1 | rna-NM_001183322.1_SA1 | cds-NP_014574.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:184290-184823:- | gene-YOL067C_ThermosaccDry | rna-NM_001183322.1_ThermosaccDry | cds-NP_014574.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:185053-185586:- | gene-YOL067C_VR1 | rna-NM_001183322.1_VR1 | cds-NP_014574.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:183934-184467:- | gene-YOL067C_ZTW1 | rna-NM_001183322.1_ZTW1 | cds-NP_014574.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:187469-188002:- | gene-YOL067C_Sparadoxus | rna-NM_001183322.1_Sparadoxus | cds-NP_014574.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |