Gene name: RTC6
Reference locus (S288C): YPL183W-A
Gene biotype: protein_coding
Description: 54S ribosomal protein RTC6, mitochondrial; Protein involved in translation; mutants have defects in biogenesis of nuclear ribosomes; sequence similar to prokaryotic ribosomal protein L36, may be a mitochondrial ribosomal protein; protein abundance increases in response to DNA replication stress; Belongs to the bacterial ribosomal protein bL36 family
Top 10 interactors (score): MRP17 (0.999); MRPS16 (0.999); MRPL32 (0.999); MRPL27 (0.999); MRPL9 (0.999); MRPL28 (0.999); MRPL16 (0.999); IMG1 (0.999); MRPS5 (0.999); MRPS12 (0.999); MRPL23 (0.999); MRP7 (0.999); MRPL39 (0.999); MRPL8 (0.999); MRP4 (0.999); MRPL10 (0.999); MRPS9 (0.998); MNP1 (0.998); RSM7 (0.998); RSM18 (0.998)
Homologues (species, bitscore): MRPL36 (Homo sapiens, 62.8); Mrpl36 (Mus musculus, 55.5); mrpl36 (Danio rerio, 55.8); AT5G20180 (Arabidopsis thaliana, 56.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:177098-177379:+ | gene-YPL183W-A_AKU4011 | rna-NM_001184317.1_AKU4011 | cds-NP_015141.1_AKU4011 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:382709-382990:+ | gene-YPL183W-A_BG1 | rna-NM_001184317.1_BG1 | cds-NP_015141.1_BG1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:202944-203225:+ | gene-YPL183W-A_Bruggeman | rna-NM_001184317.1_Bruggeman | cds-NP_015141.1_Bruggeman | 98.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:199286-199567:+ | gene-YPL183W-A_CAT1 | rna-NM_001184317.1_CAT1 | cds-NP_015141.1_CAT1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:181164-181445:+ | gene-YPL183W-A_CBS1585 | rna-NM_001184317.1_CBS1585 | cds-NP_015141.1_CBS1585 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:195820-196101:+ | gene-YPL183W-A_CBS436 | rna-NM_001184317.1_CBS436 | cds-NP_015141.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:185833-186114:+ | gene-YPL183W-A_CBS6412 | rna-NM_001184317.1_CBS6412 | cds-NP_015141.1_CBS6412 | 97.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:177316-177597:+ | gene-YPL183W-A_CBS6413 | rna-NM_001184317.1_CBS6413 | cds-NP_015141.1_CBS6413 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:198977-199258:+ | gene-YPL183W-A_CENPK1137D | rna-NM_001184317.1_CENPK1137D | cds-NP_015141.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:175840-176121:+ | gene-YPL183W-A_EthanolRed | rna-NM_001184317.1_EthanolRed | cds-NP_015141.1_EthanolRed | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:183432-183713:+ | gene-YPL183W-A_FaliES1 | rna-NM_001184317.1_FaliES1 | cds-NP_015141.1_FaliES1 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:182188-182469:- | gene-YPL183W-A_JAY291 | rna-NM_001184317.1_JAY291 | cds-NP_015141.1_JAY291 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:194325-194606:+ | gene-YPL183W-A_MUCL30387 | rna-NM_001184317.1_MUCL30387 | cds-NP_015141.1_MUCL30387 | 98.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:192345-192626:+ | gene-YPL183W-A_MUCL30388 | rna-NM_001184317.1_MUCL30388 | cds-NP_015141.1_MUCL30388 | 98.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:174493-174774:+ | gene-YPL183W-A_MUCL39482 | rna-NM_001184317.1_MUCL39482 | cds-NP_015141.1_MUCL39482 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:231172-231453:+ | gene-YPL183W-A_MUCL42920 | rna-NM_001184317.1_MUCL42920 | cds-NP_015141.1_MUCL42920 | 98.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:199078-199359:+ | gene-YPL183W-A_NCIM3186 | rna-NM_001184317.1_NCIM3186 | cds-NP_015141.1_NCIM3186 | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:180945-181226:+ | gene-YPL183W-A_NCYC1407 | rna-NM_001184317.1_NCYC1407 | cds-NP_015141.1_NCYC1407 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:188387-188668:+ | gene-YPL183W-A_PE2H3 | rna-NM_001184317.1_PE2H3 | cds-NP_015141.1_PE2H3 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:188030-188311:+ | gene-YPL183W-A_PE2H4 | rna-NM_001184317.1_PE2H4 | cds-NP_015141.1_PE2H4 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:199095-199376:+ | gene-YPL183W-A_S288C | rna-NM_001184317.1_S288C | cds-NP_015141.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:173970-174251:- | gene-YPL183W-A_SA1 | rna-NM_001184317.1_SA1 | cds-NP_015141.1_SA1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:183230-183511:+ | gene-YPL183W-A_ThermosaccDry | rna-NM_001184317.1_ThermosaccDry | cds-NP_015141.1_ThermosaccDry | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:198160-198441:+ | gene-YPL183W-A_VR1 | rna-NM_001184317.1_VR1 | cds-NP_015141.1_VR1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:182559-182840:+ | gene-YPL183W-A_ZTW1 | rna-NM_001184317.1_ZTW1 | cds-NP_015141.1_ZTW1 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:184170-184451:+ | gene-YPL183W-A_Sparadoxus | rna-NM_001184317.1_Sparadoxus | cds-NP_015141.1_Sparadoxus | 87.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |