RTC5 (YOR118W)

Gene profile

Gene name: RTC5
Reference locus (S288C): YOR118W
Gene biotype: protein_coding

Description: Restriction of telomere capping protein 5; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; null mutation suppresses cdc13-1 temperature sensitivity

Top 10 interactors (score): Unknown

Homologues (species, bitscore): Unknown

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005309.1:530923-532626:+ gene-YOR118W_AKU4011 rna-NM_001183537.1_AKU4011 cds-NP_014761.1_AKU4011 99.4 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000171.1:46643-48346:- gene-YOR118W_BG1 rna-NM_001183537.1_BG1 cds-NP_014761.1_BG1 99.6 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005517.1:534470-536173:+ gene-YOR118W_Bruggeman rna-NM_001183537.1_Bruggeman cds-NP_014761.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005533.1:534474-536177:+ gene-YOR118W_CAT1 rna-NM_001183537.1_CAT1 cds-NP_014761.1_CAT1 99.9 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005373.1:526486-528189:+ gene-YOR118W_CBS1585 rna-NM_001183537.1_CBS1585 cds-NP_014761.1_CBS1585 99.4 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005357.1:531194-532897:+ gene-YOR118W_CBS436 rna-NM_001183537.1_CBS436 cds-NP_014761.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005341.1:524972-526675:+ gene-YOR118W_CBS6412 rna-NM_001183537.1_CBS6412 cds-NP_014761.1_CBS6412 99.4 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005325.1:532268-533971:+ gene-YOR118W_CBS6413 rna-NM_001183537.1_CBS6413 cds-NP_014761.1_CBS6413 99.4 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001536.1:546937-548640:+ gene-YOR118W_CENPK1137D rna-NM_001183537.1_CENPK1137D cds-NP_014761.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005485.1:527291-528994:+ gene-YOR118W_EthanolRed rna-NM_001183537.1_EthanolRed cds-NP_014761.1_EthanolRed 99.6 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005549.1:530986-532689:+ gene-YOR118W_FaliES1 rna-NM_001183537.1_FaliES1 cds-NP_014761.1_FaliES1 99.6 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000063.1:26576-28279:- gene-YOR118W_JAY291 rna-NM_001183537.1_JAY291 cds-NP_014761.1_JAY291 99.6 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005421.1:539027-540730:+ gene-YOR118W_MUCL30387 rna-NM_001183537.1_MUCL30387 cds-NP_014761.1_MUCL30387 99.9 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005453.1:544237-545940:+ gene-YOR118W_MUCL30388 rna-NM_001183537.1_MUCL30388 cds-NP_014761.1_MUCL30388 99.8 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005293.1:533880-535583:+ gene-YOR118W_MUCL39482 rna-NM_001183537.1_MUCL39482 cds-NP_014761.1_MUCL39482 99.4 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005437.1:549925-551628:+ gene-YOR118W_MUCL42920 rna-NM_001183537.1_MUCL42920 cds-NP_014761.1_MUCL42920 99.7 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:546746-548449:+ gene-YOR118W_NCIM3186 rna-NM_001183537.1_NCIM3186 cds-NP_014761.1_NCIM3186 99.4 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005277.1:540328-542031:+ gene-YOR118W_NCYC1407 rna-NM_001183537.1_NCYC1407 cds-NP_014761.1_NCYC1407 99.4 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:539331-541034:+ gene-YOR118W_PE2H3 rna-NM_001183537.1_PE2H3 cds-NP_014761.1_PE2H3 99.6 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999886.1:549708-551411:+ gene-YOR118W_PE2H4 rna-NM_001183537.1_PE2H4 cds-NP_014761.1_PE2H4 99.6 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:546857-548560:+ gene-YOR118W_S288C rna-NM_001183537.1_S288C cds-NP_014761.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000034.1:76399-78102:+ gene-YOR118W_SA1 rna-NM_001183537.1_SA1 cds-NP_014761.1_SA1 99.6 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005501.1:530170-531873:+ gene-YOR118W_ThermosaccDry rna-NM_001183537.1_ThermosaccDry cds-NP_014761.1_ThermosaccDry 99.6 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005469.1:532276-533979:+ gene-YOR118W_VR1 rna-NM_001183537.1_VR1 cds-NP_014761.1_VR1 99.6 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000032.1:264108-265811:+ gene-YOR118W_ZTW1 rna-NM_001183537.1_ZTW1 cds-NP_014761.1_ZTW1 99.5 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047501.1:536128-537831:+ gene-YOR118W_Sparadoxus rna-NM_001183537.1_Sparadoxus cds-NP_014761.1_Sparadoxus 89.8 100.0 Verified 1 1 1 False True False False False

Additional files