Gene name: RTC4
Reference locus (S288C): YNL254C
Gene biotype: protein_coding
Description: Restriction of telomere capping protein 4; Protein of unknown function; null mutation suppresses cdc13-1 temperature sensitivity; (GFP)-fusion protein localizes to both the cytoplasm and the nucleus
Top 10 interactors (score): FOL1 (0.813); GIS2 (0.8); ZAP1 (0.779); YOR387C (0.767); VEL1 (0.759); ZPS1 (0.715); USE1 (0.711); FAP1 (0.711); ZRT3 (0.699); YHK8 (0.678); MNR2 (0.67); ADH4 (0.619); ZRT1 (0.611); COS10 (0.573); TAF10 (0.569); THS1 (0.569); FET4 (0.563); MNT2 (0.561); SRB7 (0.527); FRE4 (0.525)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:161814-163019:- | gene-YNL254C_AKU4011 | rna-NM_001183092.1_AKU4011 | cds-NP_014145.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:65772-66977:- | gene-YNL254C_BG1 | rna-NM_001183092.1_BG1 | cds-NP_014145.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:171637-172842:- | gene-YNL254C_Bruggeman | rna-NM_001183092.1_Bruggeman | cds-NP_014145.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:178931-180136:- | gene-YNL254C_CAT1 | rna-NM_001183092.1_CAT1 | cds-NP_014145.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:162214-163419:- | gene-YNL254C_CBS1585 | rna-NM_001183092.1_CBS1585 | cds-NP_014145.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:157315-158520:- | gene-YNL254C_CBS436 | rna-NM_001183092.1_CBS436 | cds-NP_014145.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:158625-159830:- | gene-YNL254C_CBS6412 | rna-NM_001183092.1_CBS6412 | cds-NP_014145.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:158907-160112:- | gene-YNL254C_CBS6413 | rna-NM_001183092.1_CBS6413 | cds-NP_014145.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:161857-163062:- | gene-YNL254C_CENPK1137D | rna-NM_001183092.1_CENPK1137D | cds-NP_014145.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:159465-160670:- | gene-YNL254C_EthanolRed | rna-NM_001183092.1_EthanolRed | cds-NP_014145.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:154200-155405:- | gene-YNL254C_FaliES1 | rna-NM_001183092.1_FaliES1 | cds-NP_014145.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:65367-66572:- | gene-YNL254C_JAY291 | rna-NM_001183092.1_JAY291 | cds-NP_014145.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:167420-168625:- | gene-YNL254C_MUCL30387 | rna-NM_001183092.1_MUCL30387 | cds-NP_014145.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:166005-167210:- | gene-YNL254C_MUCL30388 | rna-NM_001183092.1_MUCL30388 | cds-NP_014145.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:159704-160909:- | gene-YNL254C_MUCL39482 | rna-NM_001183092.1_MUCL39482 | cds-NP_014145.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:161972-163177:- | gene-YNL254C_MUCL42920 | rna-NM_001183092.1_MUCL42920 | cds-NP_014145.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:168012-169217:- | gene-YNL254C_NCIM3186 | rna-NM_001183092.1_NCIM3186 | cds-NP_014145.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:161809-163014:- | gene-YNL254C_NCYC1407 | rna-NM_001183092.1_NCYC1407 | cds-NP_014145.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:158709-159914:- | gene-YNL254C_PE2H3 | rna-NM_001183092.1_PE2H3 | cds-NP_014145.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:158097-159302:- | gene-YNL254C_PE2H4 | rna-NM_001183092.1_PE2H4 | cds-NP_014145.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:168043-169248:- | gene-YNL254C_S288C | rna-NM_001183092.1_S288C | cds-NP_014145.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:83041-84246:+ | gene-YNL254C_SA1 | rna-NM_001183092.1_SA1 | cds-NP_014145.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:155056-156261:- | gene-YNL254C_ThermosaccDry | rna-NM_001183092.1_ThermosaccDry | cds-NP_014145.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:173967-175172:- | gene-YNL254C_VR1 | rna-NM_001183092.1_VR1 | cds-NP_014145.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:65388-66593:- | gene-YNL254C_ZTW1 | rna-NM_001183092.1_ZTW1 | cds-NP_014145.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:165283-166485:- | gene-YNL254C_Sparadoxus | rna-NM_001183092.1_Sparadoxus | cds-NP_014145.1_Sparadoxus | 85.7 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |