Gene name: RTC3
Reference locus (S288C): YHR087W
Gene biotype: protein_coding
Description: Restriction of telomere capping protein 3; Protein of unknown function involved in RNA metabolism; has structural similarity to SBDS, the human protein mutated in Shwachman-Diamond Syndrome (the yeast SBDS ortholog = SDO1); null mutation suppresses cdc13-1 temperature sensitivity; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): MSC1 (0.997); TFS1 (0.975); SOL4 (0.969); SDO1 (0.961); TIF6 (0.96); NQM1 (0.959); GAD1 (0.957); HSP12 (0.955); TSL1 (0.948); PGM2 (0.947); SPI1 (0.947); CTT1 (0.947); HXK1 (0.943); DCS2 (0.941); PNC1 (0.941); STF2 (0.941); TPS2 (0.928); GRE3 (0.928); DDR2 (0.928); ALD3 (0.927)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:267230-267565:+ | gene-YHR087W_AKU4011 | rna-NM_001179217.1_AKU4011 | cds-NP_011955.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:187577-187912:+ | gene-YHR087W_BG1 | rna-NM_001179217.1_BG1 | cds-NP_011955.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:275057-275392:+ | gene-YHR087W_Bruggeman | rna-NM_001179217.1_Bruggeman | cds-NP_011955.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:270197-270532:+ | gene-YHR087W_CAT1 | rna-NM_001179217.1_CAT1 | cds-NP_011955.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:266272-266607:+ | gene-YHR087W_CBS1585 | rna-NM_001179217.1_CBS1585 | cds-NP_011955.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:264135-264470:+ | gene-YHR087W_CBS436 | rna-NM_001179217.1_CBS436 | cds-NP_011955.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:269620-269955:+ | gene-YHR087W_CBS6412 | rna-NM_001179217.1_CBS6412 | cds-NP_011955.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:267311-267646:+ | gene-YHR087W_CBS6413 | rna-NM_001179217.1_CBS6413 | cds-NP_011955.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:273988-274323:+ | gene-YHR087W_CENPK1137D | rna-NM_001179217.1_CENPK1137D | cds-NP_011955.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:326836-327171:+ | gene-YHR087W_EthanolRed | rna-NM_001179217.1_EthanolRed | cds-NP_011955.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:267640-267975:+ | gene-YHR087W_FaliES1 | rna-NM_001179217.1_FaliES1 | cds-NP_011955.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:50364-50699:+ | gene-YHR087W_JAY291 | rna-NM_001179217.1_JAY291 | cds-NP_011955.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:274578-274913:+ | gene-YHR087W_MUCL30387 | rna-NM_001179217.1_MUCL30387 | cds-NP_011955.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:274440-274775:+ | gene-YHR087W_MUCL30388 | rna-NM_001179217.1_MUCL30388 | cds-NP_011955.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:266595-266930:+ | gene-YHR087W_MUCL39482 | rna-NM_001179217.1_MUCL39482 | cds-NP_011955.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:273343-273678:+ | gene-YHR087W_MUCL42920 | rna-NM_001179217.1_MUCL42920 | cds-NP_011955.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:280702-281037:+ | gene-YHR087W_NCIM3186 | rna-NM_001179217.1_NCIM3186 | cds-NP_011955.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:269060-269395:+ | gene-YHR087W_NCYC1407 | rna-NM_001179217.1_NCYC1407 | cds-NP_011955.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:268729-269064:+ | gene-YHR087W_PE2H3 | rna-NM_001179217.1_PE2H3 | cds-NP_011955.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:276176-276511:+ | gene-YHR087W_PE2H4 | rna-NM_001179217.1_PE2H4 | cds-NP_011955.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:280820-281155:+ | gene-YHR087W_S288C | rna-NM_001179217.1_S288C | cds-NP_011955.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:77833-78168:- | gene-YHR087W_SA1 | rna-NM_001179217.1_SA1 | cds-NP_011955.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:268731-269066:+ | gene-YHR087W_ThermosaccDry | rna-NM_001179217.1_ThermosaccDry | cds-NP_011955.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:276605-276940:+ | gene-YHR087W_VR1 | rna-NM_001179217.1_VR1 | cds-NP_011955.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:260286-260621:+ | gene-YHR087W_ZTW1 | rna-NM_001179217.1_ZTW1 | cds-NP_011955.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:266034-266357:+ | gene-YHR087W_Sparadoxus | rna-NM_001179217.1_Sparadoxus | cds-NP_011955.1_Sparadoxus | 87.5 | 96.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |