Gene name: RTA1
Reference locus (S288C): YGR213C
Gene biotype: protein_coding
Description: Protein involved in 7-aminocholesterol resistance; has seven potential membrane-spanning regions; expression is induced under both low-heme and low-oxygen conditions; member of the fungal lipid-translocating exporter (LTE) family of protein; RTA1 has a paralog, YLR046C, that arose from the whole genome duplication
Top 10 interactors (score): CIS1 (0.813); ATF2 (0.7); PDH1 (0.697); YML131W (0.695); SGE1 (0.67); YBT1 (0.624); YLL056C (0.619); PRM7 (0.617); PDR1 (0.617); PDR3 (0.615); YOR1 (0.575); OXR1 (0.572); TPO4 (0.571); GTT2 (0.57); YIM1 (0.516); YMR102C (0.499); MNT3 (0.481); YDL114W (0.481); MNC1 (0.476); SFT2 (0.454)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:884031-884984:- | gene-YGR213C_AKU4011 | rna-NM_001181342.1_AKU4011 | cds-NP_011729.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:164412-165365:- | gene-YGR213C_BG1 | rna-NM_001181342.1_BG1 | cds-NP_011729.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:892230-893183:- | gene-YGR213C_Bruggeman | rna-NM_001181342.1_Bruggeman | cds-NP_011729.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:890226-891179:- | gene-YGR213C_CAT1 | rna-NM_001181342.1_CAT1 | cds-NP_011729.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:887469-888422:- | gene-YGR213C_CBS1585 | rna-NM_001181342.1_CBS1585 | cds-NP_011729.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:890820-891773:- | gene-YGR213C_CBS436 | rna-NM_001181342.1_CBS436 | cds-NP_011729.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:878341-879294:- | gene-YGR213C_CBS6412 | rna-NM_001181342.1_CBS6412 | cds-NP_011729.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:884400-885353:- | gene-YGR213C_CBS6413 | rna-NM_001181342.1_CBS6413 | cds-NP_011729.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:918222-919175:- | gene-YGR213C_CENPK1137D | rna-NM_001181342.1_CENPK1137D | cds-NP_011729.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:872850-873803:- | gene-YGR213C_EthanolRed | rna-NM_001181342.1_EthanolRed | cds-NP_011729.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:877241-878194:- | gene-YGR213C_FaliES1 | rna-NM_001181342.1_FaliES1 | cds-NP_011729.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000148.1:34965-35918:- | gene-YGR213C_JAY291 | rna-NM_001181342.1_JAY291 | cds-NP_011729.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:889714-890667:- | gene-YGR213C_MUCL30387 | rna-NM_001181342.1_MUCL30387 | cds-NP_011729.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:889398-890351:- | gene-YGR213C_MUCL30388 | rna-NM_001181342.1_MUCL30388 | cds-NP_011729.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:882545-883498:- | gene-YGR213C_MUCL39482 | rna-NM_001181342.1_MUCL39482 | cds-NP_011729.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:900091-901044:- | gene-YGR213C_MUCL42920 | rna-NM_001181342.1_MUCL42920 | cds-NP_011729.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:918512-919465:- | gene-YGR213C_NCIM3186 | rna-NM_001181342.1_NCIM3186 | cds-NP_011729.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:878201-879154:- | gene-YGR213C_NCYC1407 | rna-NM_001181342.1_NCYC1407 | cds-NP_011729.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:902807-903760:- | gene-YGR213C_PE2H3 | rna-NM_001181342.1_PE2H3 | cds-NP_011729.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:907917-908870:- | gene-YGR213C_PE2H4 | rna-NM_001181342.1_PE2H4 | cds-NP_011729.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:918512-919465:- | gene-YGR213C_S288C | rna-NM_001181342.1_S288C | cds-NP_011729.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:81926-82879:+ | gene-YGR213C_SA1 | rna-NM_001181342.1_SA1 | cds-NP_011729.1_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:897752-898705:- | gene-YGR213C_ThermosaccDry | rna-NM_001181342.1_ThermosaccDry | cds-NP_011729.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1002235-1003188:- | gene-YGR213C_VR1 | rna-NM_001181342.1_VR1 | cds-NP_011729.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:199195-200148:- | gene-YGR213C_ZTW1 | rna-NM_001181342.1_ZTW1 | cds-NP_011729.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:889669-890623:- | gene-YGR213C_Sparadoxus | rna-NM_001181342.1_Sparadoxus | cds-NP_011729.1_Sparadoxus | 87.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |