Gene name: RSM28
Reference locus (S288C): YDR494W
Gene biotype: protein_coding
Description: 37S ribosomal protein RSM28, mitochondrial; Mitochondrial ribosomal protein of the small subunit; genetic interactions suggest a possible role in promoting translation initiation
Top 10 interactors (score): MRP21 (0.992); NAM9 (0.988); MRPS5 (0.987); RSM18 (0.986); MRPS18 (0.985); MRPS9 (0.984); MRPS17 (0.982); MRPS8 (0.981); MRP13 (0.981); RSM23 (0.981); RSM10 (0.981); RSM24 (0.98); MRPS28 (0.98); MRPS16 (0.98); RSM25 (0.98); VAR1 (0.98); RSM26 (0.98); PET123 (0.98); RSM27 (0.979); MRP51 (0.979)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1376915-1378000:+ | gene-YDR494W_AKU4011 | rna-NM_001180802.3_AKU4011 | cds-NP_010782.4_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:18469-19554:+ | gene-YDR494W_BG1 | rna-NM_001180802.3_BG1 | cds-NP_010782.4_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1408261-1409346:+ | gene-YDR494W_Bruggeman | rna-NM_001180802.3_Bruggeman | cds-NP_010782.4_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1385415-1386500:+ | gene-YDR494W_CAT1 | rna-NM_001180802.3_CAT1 | cds-NP_010782.4_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1371157-1372242:+ | gene-YDR494W_CBS1585 | rna-NM_001180802.3_CBS1585 | cds-NP_010782.4_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1390510-1391595:+ | gene-YDR494W_CBS436 | rna-NM_001180802.3_CBS436 | cds-NP_010782.4_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1366799-1367884:+ | gene-YDR494W_CBS6412 | rna-NM_001180802.3_CBS6412 | cds-NP_010782.4_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1389814-1390899:+ | gene-YDR494W_CBS6413 | rna-NM_001180802.3_CBS6413 | cds-NP_010782.4_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1435626-1436711:+ | gene-YDR494W_CENPK1137D | rna-NM_001180802.3_CENPK1137D | cds-NP_010782.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1380206-1381291:+ | gene-YDR494W_EthanolRed | rna-NM_001180802.3_EthanolRed | cds-NP_010782.4_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1383759-1384844:+ | gene-YDR494W_FaliES1 | rna-NM_001180802.3_FaliES1 | cds-NP_010782.4_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:82004-83089:+ | gene-YDR494W_JAY291 | rna-NM_001180802.3_JAY291 | cds-NP_010782.4_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1390759-1391844:+ | gene-YDR494W_MUCL30387 | rna-NM_001180802.3_MUCL30387 | cds-NP_010782.4_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1372779-1373864:+ | gene-YDR494W_MUCL30388 | rna-NM_001180802.3_MUCL30388 | cds-NP_010782.4_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1362642-1363727:+ | gene-YDR494W_MUCL39482 | rna-NM_001180802.3_MUCL39482 | cds-NP_010782.4_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1305432-1306517:+ | gene-YDR494W_MUCL42920 | rna-NM_001180802.3_MUCL42920 | cds-NP_010782.4_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1436853-1437938:+ | gene-YDR494W_NCIM3186 | rna-NM_001180802.3_NCIM3186 | cds-NP_010782.4_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1376429-1377514:+ | gene-YDR494W_NCYC1407 | rna-NM_001180802.3_NCYC1407 | cds-NP_010782.4_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1387271-1388356:+ | gene-YDR494W_PE2H3 | rna-NM_001180802.3_PE2H3 | cds-NP_010782.4_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1392845-1393930:+ | gene-YDR494W_PE2H4 | rna-NM_001180802.3_PE2H4 | cds-NP_010782.4_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1436930-1438015:+ | gene-YDR494W_S288C | rna-NM_001180802.3_S288C | cds-NP_010782.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:179124-180209:- | gene-YDR494W_SA1 | rna-NM_001180802.3_SA1 | cds-NP_010782.4_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1387981-1389066:+ | gene-YDR494W_ThermosaccDry | rna-NM_001180802.3_ThermosaccDry | cds-NP_010782.4_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1403716-1404801:+ | gene-YDR494W_VR1 | rna-NM_001180802.3_VR1 | cds-NP_010782.4_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:430647-431732:+ | gene-YDR494W_ZTW1 | rna-NM_001180802.3_ZTW1 | cds-NP_010782.4_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1390788-1391873:+ | gene-YDR494W_Sparadoxus | rna-NM_001180802.3_Sparadoxus | cds-NP_010782.4_Sparadoxus | 89.1 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |