Gene name: RSF2
Reference locus (S288C): YJR127C
Gene biotype: protein_coding
Description: Respiration factor 2; Zinc-finger protein; involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions; RSF2 has a paralog, TDA9, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasm upon DNA replication stress
Top 10 interactors (score): STP3 (0.714); VPS70 (0.68); ALD6 (0.677); EMP24 (0.618); MRK1 (0.579); TOS8 (0.564); ISW1 (0.557); TSL1 (0.553); MAE1 (0.534); ZWF1 (0.532); RSF1 (0.526); SLT2 (0.526); MBR1 (0.522); HOP1 (0.504); NHP10 (0.504); YPR089W (0.495); DAL2 (0.472); PPR1 (0.465); RPD3 (0.456); YEL034C-A (0.452)
Homologues (species, bitscore): ZNF672 (Homo sapiens, 67.8); Zfp764 (Mus musculus, 63.9); ENSDARP00000106727 (Danio rerio, 65.5); ZNF648 (Xenopus tropicalis, 66.2); sr (Drosophila melanogaster, 60.8); ZC328.2 (Caenorhabditis elegans, 61.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:630414-634556:- | gene-YJR127C_AKU4011 | rna-NM_001181785.3_AKU4011 | cds-NP_012661.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000076.1:39044-43168:+ | gene-YJR127C_BG1 | rna-NM_001181785.3_BG1 | cds-NP_012661.3_BG1 | 98.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:646132-650274:- | gene-YJR127C_Bruggeman | rna-NM_001181785.3_Bruggeman | cds-NP_012661.3_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:650799-654929:- | gene-YJR127C_CAT1 | rna-NM_001181785.3_CAT1 | cds-NP_012661.3_CAT1 | 99.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:642456-646598:- | gene-YJR127C_CBS1585 | rna-NM_001181785.3_CBS1585 | cds-NP_012661.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:661331-665472:- | gene-YJR127C_CBS436 | rna-NM_001181785.3_CBS436 | cds-NP_012661.3_CBS436 | 99.1 | 99.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:629232-633374:- | gene-YJR127C_CBS6412 | rna-NM_001181785.3_CBS6412 | cds-NP_012661.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:631887-636029:- | gene-YJR127C_CBS6413 | rna-NM_001181785.3_CBS6413 | cds-NP_012661.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:641275-645419:- | gene-YJR127C_CENPK1137D | rna-NM_001181785.3_CENPK1137D | cds-NP_012661.3_CENPK1137D | 95.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:634829-638974:- | gene-YJR127C_EthanolRed | rna-NM_001181785.3_EthanolRed | cds-NP_012661.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:646292-650437:- | gene-YJR127C_FaliES1 | rna-NM_001181785.3_FaliES1 | cds-NP_012661.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:38717-42841:+ | gene-YJR127C_JAY291 | rna-NM_001181785.3_JAY291 | cds-NP_012661.3_JAY291 | 98.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:644919-649070:- | gene-YJR127C_MUCL30387 | rna-NM_001181785.3_MUCL30387 | cds-NP_012661.3_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:642650-646792:- | gene-YJR127C_MUCL30388 | rna-NM_001181785.3_MUCL30388 | cds-NP_012661.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:635938-640080:- | gene-YJR127C_MUCL39482 | rna-NM_001181785.3_MUCL39482 | cds-NP_012661.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:640677-644819:- | gene-YJR127C_MUCL42920 | rna-NM_001181785.3_MUCL42920 | cds-NP_012661.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:658896-663038:- | gene-YJR127C_NCIM3186 | rna-NM_001181785.3_NCIM3186 | cds-NP_012661.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:633489-637631:- | gene-YJR127C_NCYC1407 | rna-NM_001181785.3_NCYC1407 | cds-NP_012661.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:651679-655824:- | gene-YJR127C_PE2H3 | rna-NM_001181785.3_PE2H3 | cds-NP_012661.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:645368-649513:- | gene-YJR127C_PE2H4 | rna-NM_001181785.3_PE2H4 | cds-NP_012661.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:658917-663059:- | gene-YJR127C_S288C | rna-NM_001181785.3_S288C | cds-NP_012661.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000069.1:39069-43214:+ | gene-YJR127C_SA1 | rna-NM_001181785.3_SA1 | cds-NP_012661.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:640223-644368:- | gene-YJR127C_ThermosaccDry | rna-NM_001181785.3_ThermosaccDry | cds-NP_012661.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:642602-646747:- | gene-YJR127C_VR1 | rna-NM_001181785.3_VR1 | cds-NP_012661.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:619574-623719:- | gene-YJR127C_ZTW1 | rna-NM_001181785.3_ZTW1 | cds-NP_012661.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:653838-657940:- | gene-YJR127C_Sparadoxus | rna-NM_001181785.3_Sparadoxus | cds-NP_012661.3_Sparadoxus | 88.9 | 98.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |