Gene name: RSE1
Reference locus (S288C): YML049C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor RSE1; Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport; Belongs to the RSE1 family
Top 10 interactors (score): CLF1 (0.999); SMD1 (0.999); MSL1 (0.999); HSH155 (0.999); HSH49 (0.999); SMD3 (0.999); SMB1 (0.999); CEF1 (0.999); PRP6 (0.999); SMD2 (0.999); SNU66 (0.999); PRP9 (0.999); CDC40 (0.999); BRR2 (0.999); CUS1 (0.999); PRP8 (0.999); SMX2 (0.999); SNU114 (0.999); PRP19 (0.999); LEA1 (0.999)
Homologues (species, bitscore): SF3B3 (Homo sapiens, 335.1); Sf3b3 (Mus musculus, 335.1); sf3b3 (Danio rerio, 337.0); SF3B3 (Xenopus tropicalis, 331.3); CG13900 (Drosophila melanogaster, 337.0); teg-4 (Caenorhabditis elegans, 343.6); SAP130a (Arabidopsis thaliana, 314.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:167601-171686:- | gene-YML049C_AKU4011 | rna-NM_001182407.1_AKU4011 | cds-NP_013663.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:304154-308239:+ | gene-YML049C_BG1 | rna-NM_001182407.1_BG1 | cds-NP_013663.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:173715-177800:- | gene-YML049C_Bruggeman | rna-NM_001182407.1_Bruggeman | cds-NP_013663.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:177215-181300:- | gene-YML049C_CAT1 | rna-NM_001182407.1_CAT1 | cds-NP_013663.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:168363-172448:- | gene-YML049C_CBS1585 | rna-NM_001182407.1_CBS1585 | cds-NP_013663.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:173504-177589:- | gene-YML049C_CBS436 | rna-NM_001182407.1_CBS436 | cds-NP_013663.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:282161-286246:- | gene-YML049C_CBS6412 | rna-NM_001182407.1_CBS6412 | cds-NP_013663.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:167675-171760:- | gene-YML049C_CBS6413 | rna-NM_001182407.1_CBS6413 | cds-NP_013663.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:180422-184507:- | gene-YML049C_CENPK1137D | rna-NM_001182407.1_CENPK1137D | cds-NP_013663.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:168481-172551:- | gene-YML049C_EthanolRed | rna-NM_001182407.1_EthanolRed | cds-NP_013663.1_EthanolRed | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:169027-173097:- | gene-YML049C_FaliES1 | rna-NM_001182407.1_FaliES1 | cds-NP_013663.1_FaliES1 | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000172.1:5730-9815:+ | gene-YML049C_JAY291 | rna-NM_001182407.1_JAY291 | cds-NP_013663.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:172253-176323:- | gene-YML049C_MUCL30387 | rna-NM_001182407.1_MUCL30387 | cds-NP_013663.1_MUCL30387 | 99.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:176338-180408:- | gene-YML049C_MUCL30388 | rna-NM_001182407.1_MUCL30388 | cds-NP_013663.1_MUCL30388 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:168709-172794:- | gene-YML049C_MUCL39482 | rna-NM_001182407.1_MUCL39482 | cds-NP_013663.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:173429-177600:- | gene-YML049C_MUCL42920 | rna-NM_001182407.1_MUCL42920 | cds-NP_013663.1_MUCL42920 | 96.8 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:174174-178259:- | gene-YML049C_NCIM3186 | rna-NM_001182407.1_NCIM3186 | cds-NP_013663.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:168670-172755:- | gene-YML049C_NCYC1407 | rna-NM_001182407.1_NCYC1407 | cds-NP_013663.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:174171-178256:- | gene-YML049C_PE2H3 | rna-NM_001182407.1_PE2H3 | cds-NP_013663.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:174356-178441:- | gene-YML049C_PE2H4 | rna-NM_001182407.1_PE2H4 | cds-NP_013663.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:174220-178305:- | gene-YML049C_S288C | rna-NM_001182407.1_S288C | cds-NP_013663.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:5840-9925:+ | gene-YML049C_SA1 | rna-NM_001182407.1_SA1 | cds-NP_013663.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:168528-172598:- | gene-YML049C_ThermosaccDry | rna-NM_001182407.1_ThermosaccDry | cds-NP_013663.1_ThermosaccDry | 98.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:171977-176062:- | gene-YML049C_VR1 | rna-NM_001182407.1_VR1 | cds-NP_013663.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:147561-151631:- | gene-YML049C_ZTW1 | rna-NM_001182407.1_ZTW1 | cds-NP_013663.1_ZTW1 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:179133-183232:- | gene-YML049C_Sparadoxus | rna-NM_001182407.1_Sparadoxus | cds-NP_013663.1_Sparadoxus | 87.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |