Gene name: RSC9
Reference locus (S288C): YML127W
Gene biotype: protein_coding
Description: Chromatin structure-remodeling complex subunit RSC9; Component of the RSC chromatin remodeling complex; DNA-binding protein involved in the synthesis of rRNA and in transcriptional repression and activation of genes regulated by the Target of Rapamycin (TOR) pathway; Belongs to the RSC9 family
Top 10 interactors (score): RSC8 (0.999); ARP9 (0.999); STH1 (0.999); RSC58 (0.999); RSC4 (0.999); RSC6 (0.999); NPL6 (0.999); RSC2 (0.999); RSC3 (0.999); SFH1 (0.998); ARP7 (0.998); HTL1 (0.997); LDB7 (0.996); RSC1 (0.996); RSC30 (0.995); RTT102 (0.995); HHT2 (0.981); HTA2 (0.951); HTB1 (0.917); HTA1 (0.916)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:10776-12521:+ | gene-YML127W_AKU4011 | rna-NM_001182490.1_AKU4011 | cds-NP_013579.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:464623-466368:- | gene-YML127W_BG1 | rna-NM_001182490.1_BG1 | cds-NP_013579.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:17020-18765:+ | gene-YML127W_Bruggeman | rna-NM_001182490.1_Bruggeman | cds-NP_013579.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:18600-20345:+ | gene-YML127W_CAT1 | rna-NM_001182490.1_CAT1 | cds-NP_013579.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:10776-12521:+ | gene-YML127W_CBS1585 | rna-NM_001182490.1_CBS1585 | cds-NP_013579.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:16780-18525:+ | gene-YML127W_CBS436 | rna-NM_001182490.1_CBS436 | cds-NP_013579.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:11538-13283:+ | gene-YML127W_CBS6412 | rna-NM_001182490.1_CBS6412 | cds-NP_013579.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:10002-11747:+ | gene-YML127W_CBS6413 | rna-NM_001182490.1_CBS6413 | cds-NP_013579.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:11583-13328:+ | gene-YML127W_CENPK1137D | rna-NM_001182490.1_CENPK1137D | cds-NP_013579.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:11291-13036:+ | gene-YML127W_EthanolRed | rna-NM_001182490.1_EthanolRed | cds-NP_013579.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:11564-13309:+ | gene-YML127W_FaliES1 | rna-NM_001182490.1_FaliES1 | cds-NP_013579.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:76927-78672:- | gene-YML127W_JAY291 | rna-NM_001182490.1_JAY291 | cds-NP_013579.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:15064-16809:+ | gene-YML127W_MUCL30387 | rna-NM_001182490.1_MUCL30387 | cds-NP_013579.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:18483-20228:+ | gene-YML127W_MUCL30388 | rna-NM_001182490.1_MUCL30388 | cds-NP_013579.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:10830-12575:+ | gene-YML127W_MUCL39482 | rna-NM_001182490.1_MUCL39482 | cds-NP_013579.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:14253-15998:+ | gene-YML127W_MUCL42920 | rna-NM_001182490.1_MUCL42920 | cds-NP_013579.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:17018-18763:+ | gene-YML127W_NCIM3186 | rna-NM_001182490.1_NCIM3186 | cds-NP_013579.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:11585-13330:+ | gene-YML127W_NCYC1407 | rna-NM_001182490.1_NCYC1407 | cds-NP_013579.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:16968-18713:+ | gene-YML127W_PE2H3 | rna-NM_001182490.1_PE2H3 | cds-NP_013579.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:16906-18651:+ | gene-YML127W_PE2H4 | rna-NM_001182490.1_PE2H4 | cds-NP_013579.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:17064-18809:+ | gene-YML127W_S288C | rna-NM_001182490.1_S288C | cds-NP_013579.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:8894-10639:+ | gene-YML127W_SA1 | rna-NM_001182490.1_SA1 | cds-NP_013579.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:10866-12611:+ | gene-YML127W_ThermosaccDry | rna-NM_001182490.1_ThermosaccDry | cds-NP_013579.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:15271-17016:+ | gene-YML127W_VR1 | rna-NM_001182490.1_VR1 | cds-NP_013579.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000026.1:10055-11800:+ | gene-YML127W_ZTW1 | rna-NM_001182490.1_ZTW1 | cds-NP_013579.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:21970-23715:+ | gene-YML127W_Sparadoxus | rna-NM_001182490.1_Sparadoxus | cds-NP_013579.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |