Gene name: RSC8
Reference locus (S288C): YFR037C
Gene biotype: protein_coding
Description: Chromatin structure-remodeling complex protein RSC8; Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters
Top 10 interactors (score): ARP7 (0.999); RSC4 (0.999); NPL6 (0.999); RSC30 (0.999); RSC58 (0.999); ARP9 (0.999); RSC3 (0.999); RSC9 (0.999); HTL1 (0.999); RTT102 (0.999); RSC1 (0.999); RSC2 (0.999); RSC6 (0.999); STH1 (0.999); SFH1 (0.999); SNF5 (0.998); SNF2 (0.997); LDB7 (0.996); ARP4 (0.993); SNF12 (0.984)
Homologues (species, bitscore): SMARCC2 (Homo sapiens, 206.5); Smarcc2 (Mus musculus, 207.2); smarcc2 (Danio rerio, 209.9); smarcc2 (Xenopus tropicalis, 215.3); mor (Drosophila melanogaster, 208.4); swsn-1 (Caenorhabditis elegans, 208.8); SWI3A (Arabidopsis thaliana, 149.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:217660-219333:- | gene-YFR037C_AKU4011 | rna-NM_001180002.3_AKU4011 | cds-NP_116695.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:41678-43351:+ | gene-YFR037C_BG1 | rna-NM_001180002.3_BG1 | cds-NP_116695.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:221333-223006:- | gene-YFR037C_Bruggeman | rna-NM_001180002.3_Bruggeman | cds-NP_116695.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:223271-224944:- | gene-YFR037C_CAT1 | rna-NM_001180002.3_CAT1 | cds-NP_116695.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:219160-220833:- | gene-YFR037C_CBS1585 | rna-NM_001180002.3_CBS1585 | cds-NP_116695.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:192129-193802:- | gene-YFR037C_CBS436 | rna-NM_001180002.3_CBS436 | cds-NP_116695.3_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:218235-219908:- | gene-YFR037C_CBS6412 | rna-NM_001180002.3_CBS6412 | cds-NP_116695.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:220908-222581:- | gene-YFR037C_CBS6413 | rna-NM_001180002.3_CBS6413 | cds-NP_116695.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:223602-225275:- | gene-YFR037C_CENPK1137D | rna-NM_001180002.3_CENPK1137D | cds-NP_116695.3_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:216775-218448:- | gene-YFR037C_EthanolRed | rna-NM_001180002.3_EthanolRed | cds-NP_116695.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:218425-220098:- | gene-YFR037C_FaliES1 | rna-NM_001180002.3_FaliES1 | cds-NP_116695.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:21557-23229:- | gene-YFR037C_JAY291 | rna-NM_001180002.3_JAY291 | cds-NP_116695.3_JAY291 | 99.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:221767-223440:- | gene-YFR037C_MUCL30387 | rna-NM_001180002.3_MUCL30387 | cds-NP_116695.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:217254-218920:- | gene-YFR037C_MUCL30388 | rna-NM_001180002.3_MUCL30388 | cds-NP_116695.3_MUCL30388 | 99.3 | 99.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:217082-218755:- | gene-YFR037C_MUCL39482 | rna-NM_001180002.3_MUCL39482 | cds-NP_116695.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:216697-218357:- | gene-YFR037C_MUCL42920 | rna-NM_001180002.3_MUCL42920 | cds-NP_116695.3_MUCL42920 | 99.1 | 99.2 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:227512-229185:- | gene-YFR037C_NCIM3186 | rna-NM_001180002.3_NCIM3186 | cds-NP_116695.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:217932-219605:- | gene-YFR037C_NCYC1407 | rna-NM_001180002.3_NCYC1407 | cds-NP_116695.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:259966-261639:- | gene-YFR037C_PE2H3 | rna-NM_001180002.3_PE2H3 | cds-NP_116695.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:259514-261187:- | gene-YFR037C_PE2H4 | rna-NM_001180002.3_PE2H4 | cds-NP_116695.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:227513-229186:- | gene-YFR037C_S288C | rna-NM_001180002.3_S288C | cds-NP_116695.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000086.1:41916-43589:+ | gene-YFR037C_SA1 | rna-NM_001180002.3_SA1 | cds-NP_116695.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:217594-219267:- | gene-YFR037C_ThermosaccDry | rna-NM_001180002.3_ThermosaccDry | cds-NP_116695.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:233356-235029:- | gene-YFR037C_VR1 | rna-NM_001180002.3_VR1 | cds-NP_116695.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:148041-149714:- | gene-YFR037C_ZTW1 | rna-NM_001180002.3_ZTW1 | cds-NP_116695.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:241129-242802:- | gene-YFR037C_Sparadoxus | rna-NM_001180002.3_Sparadoxus | cds-NP_116695.3_Sparadoxus | 91.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |