Gene name: RSC6
Reference locus (S288C): YCR052W
Gene biotype: protein_coding
Description: Component of the RSC chromatin remodeling complex; essential for mitotic growth; RSC6 has a paralog, SNF12, that arose from the whole genome duplication
Top 10 interactors (score): RSC2 (0.999); STH1 (0.999); RSC58 (0.999); ARP9 (0.999); NPL6 (0.999); SFH1 (0.999); RSC4 (0.999); RSC8 (0.999); RSC9 (0.999); ARP7 (0.999); RSC3 (0.999); RSC1 (0.999); SNF5 (0.998); RTT102 (0.998); HTL1 (0.997); ARP4 (0.994); LDB7 (0.994); RSC30 (0.994); SNF2 (0.979); SWI3 (0.972)
Homologues (species, bitscore): SMARCD3 (Homo sapiens, 67.0); Smarcd3 (Mus musculus, 67.0); smarcd3b (Danio rerio, 65.1); smarcd2 (Xenopus tropicalis, 60.5); Bap60 (Drosophila melanogaster, 55.8); swsn-2.2 (Caenorhabditis elegans, 52.0); CHC1 (Arabidopsis thaliana, 71.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:209453-210904:+ | gene-YCR052W_AKU4011 | rna-NM_001178766.1_AKU4011 | cds-NP_009981.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:63655-65106:+ | gene-YCR052W_BG1 | rna-NM_001178766.1_BG1 | cds-NP_009981.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:205413-206864:+ | gene-YCR052W_Bruggeman | rna-NM_001178766.1_Bruggeman | cds-NP_009981.1_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:216786-218237:+ | gene-YCR052W_CAT1 | rna-NM_001178766.1_CAT1 | cds-NP_009981.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:204231-205682:+ | gene-YCR052W_CBS1585 | rna-NM_001178766.1_CBS1585 | cds-NP_009981.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:216127-217578:+ | gene-YCR052W_CBS436 | rna-NM_001178766.1_CBS436 | cds-NP_009981.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:195971-197422:+ | gene-YCR052W_CBS6412 | rna-NM_001178766.1_CBS6412 | cds-NP_009981.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:210348-211799:+ | gene-YCR052W_CBS6413 | rna-NM_001178766.1_CBS6413 | cds-NP_009981.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:214177-215628:+ | gene-YCR052W_CENPK1137D | rna-NM_001178766.1_CENPK1137D | cds-NP_009981.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:205416-206867:+ | gene-YCR052W_EthanolRed | rna-NM_001178766.1_EthanolRed | cds-NP_009981.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:210581-212032:+ | gene-YCR052W_FaliES1 | rna-NM_001178766.1_FaliES1 | cds-NP_009981.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000014.1:11148-12599:- | gene-YCR052W_JAY291 | rna-NM_001178766.1_JAY291 | cds-NP_009981.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:202397-203848:+ | gene-YCR052W_MUCL30387 | rna-NM_001178766.1_MUCL30387 | cds-NP_009981.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:201771-203222:+ | gene-YCR052W_MUCL30388 | rna-NM_001178766.1_MUCL30388 | cds-NP_009981.1_MUCL30388 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:210804-212255:+ | gene-YCR052W_MUCL39482 | rna-NM_001178766.1_MUCL39482 | cds-NP_009981.1_MUCL39482 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:207246-208697:+ | gene-YCR052W_MUCL42920 | rna-NM_001178766.1_MUCL42920 | cds-NP_009981.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:214626-216077:+ | gene-YCR052W_NCIM3186 | rna-NM_001178766.1_NCIM3186 | cds-NP_009981.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:211663-213114:+ | gene-YCR052W_NCYC1407 | rna-NM_001178766.1_NCYC1407 | cds-NP_009981.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:220341-221792:+ | gene-YCR052W_PE2H3 | rna-NM_001178766.1_PE2H3 | cds-NP_009981.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:214867-216318:+ | gene-YCR052W_PE2H4 | rna-NM_001178766.1_PE2H4 | cds-NP_009981.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:214994-216445:+ | gene-YCR052W_S288C | rna-NM_001178766.1_S288C | cds-NP_009981.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:14877-16328:+ | gene-YCR052W_SA1 | rna-NM_001178766.1_SA1 | cds-NP_009981.1_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:210564-212015:+ | gene-YCR052W_ThermosaccDry | rna-NM_001178766.1_ThermosaccDry | cds-NP_009981.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:221839-223290:+ | gene-YCR052W_VR1 | rna-NM_001178766.1_VR1 | cds-NP_009981.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:208387-209838:+ | gene-YCR052W_ZTW1 | rna-NM_001178766.1_ZTW1 | cds-NP_009981.1_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:242529-243986:+ | gene-YCR052W_Sparadoxus | rna-NM_001178766.1_Sparadoxus | cds-NP_009981.1_Sparadoxus | 87.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |