Gene name: RSC30
Reference locus (S288C): YHR056C
Gene biotype: protein_coding
Description: Chromatin structure-remodeling complex protein RSC30; Component of the RSC chromatin remodeling complex; non-essential gene required for regulation of ribosomal protein genes and the cell wall/stress response; null mutants are osmosensitive; RSC30 has a paralog, RSC3, that arose from the whole genome duplication
Top 10 interactors (score): RSC8 (0.999); STH1 (0.998); RSC58 (0.998); RSC2 (0.998); NPL6 (0.998); RSC1 (0.997); RSC3 (0.996); RSC4 (0.996); LDB7 (0.996); HTL1 (0.996); RTT102 (0.995); RSC9 (0.995); ARP9 (0.994); RSC6 (0.994); ARP7 (0.993); SFH1 (0.986); HHT2 (0.711); SWP82 (0.702); SNF5 (0.685); BDF1 (0.636)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:201444-204095:- | gene-YHR056C_AKU4011 | rna-NM_001179186.2_AKU4011 | cds-NP_011923.2_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:122584-125235:- | gene-YHR056C_BG1 | rna-NM_001179186.2_BG1 | cds-NP_011923.2_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:203990-206641:- | gene-YHR056C_CAT1 | rna-NM_001179186.2_CAT1 | cds-NP_011923.2_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:200550-203201:- | gene-YHR056C_CBS1585 | rna-NM_001179186.2_CBS1585 | cds-NP_011923.2_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:198505-201156:- | gene-YHR056C_CBS436 | rna-NM_001179186.2_CBS436 | cds-NP_011923.2_CBS436 | 83.0 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:200782-203433:- | gene-YHR056C_CBS6412 | rna-NM_001179186.2_CBS6412 | cds-NP_011923.2_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:201614-204265:- | gene-YHR056C_CBS6413 | rna-NM_001179186.2_CBS6413 | cds-NP_011923.2_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:208346-210997:- | gene-YHR056C_CENPK1137D | rna-NM_001179186.2_CENPK1137D | cds-NP_011923.2_CENPK1137D | 59.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:200941-203592:- | gene-YHR056C_EthanolRed | rna-NM_001179186.2_EthanolRed | cds-NP_011923.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:201918-204569:- | gene-YHR056C_FaliES1 | rna-NM_001179186.2_FaliES1 | cds-NP_011923.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000280.1:12741-14622:+ | gene-YHR056C_JAY291 | rna-NM_001179186.2_JAY291 | cds-NP_011923.2_JAY291 | 70.9 | 70.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:208655-211306:- | gene-YHR056C_MUCL30387 | rna-NM_001179186.2_MUCL30387 | cds-NP_011923.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:208834-211485:- | gene-YHR056C_MUCL30388 | rna-NM_001179186.2_MUCL30388 | cds-NP_011923.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:200835-203486:- | gene-YHR056C_MUCL39482 | rna-NM_001179186.2_MUCL39482 | cds-NP_011923.2_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:207739-210390:- | gene-YHR056C_MUCL42920 | rna-NM_001179186.2_MUCL42920 | cds-NP_011923.2_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:672476-675127:- | gene-YHR056C_NCYC1407 | rna-NM_001179186.2_NCYC1407 | cds-NP_011923.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:203036-205687:- | gene-YHR056C_PE2H3 | rna-NM_001179186.2_PE2H3 | cds-NP_011923.2_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:210483-213134:- | gene-YHR056C_PE2H4 | rna-NM_001179186.2_PE2H4 | cds-NP_011923.2_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:215183-217834:- | gene-YHR056C_S288C | rna-NM_001179186.2_S288C | cds-NP_011923.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:141605-144256:+ | gene-YHR056C_SA1 | rna-NM_001179186.2_SA1 | cds-NP_011923.2_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:203009-205660:- | gene-YHR056C_ThermosaccDry | rna-NM_001179186.2_ThermosaccDry | cds-NP_011923.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:210648-213299:- | gene-YHR056C_VR1 | rna-NM_001179186.2_VR1 | cds-NP_011923.2_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:194562-197213:- | gene-YHR056C_ZTW1 | rna-NM_001179186.2_ZTW1 | cds-NP_011923.2_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:200062-202716:- | gene-YHR056C_Sparadoxus | rna-NM_001179186.2_Sparadoxus | cds-NP_011923.2_Sparadoxus | 89.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |