Gene name: RSC1
Reference locus (S288C): YGR056W
Gene biotype: protein_coding
Description: Chromatin structure-remodeling complex subunit RSC1; Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-specific genes; contains two essential bromodomains, a bromo-adjacent homology (BAH) domain, and an AT hook; RSC1 has a paralog, RSC2, that arose from the whole genome duplication; Belongs to the RSC1 family
Top 10 interactors (score): RSC8 (0.999); STH1 (0.999); RSC6 (0.999); RSC4 (0.999); NPL6 (0.998); ARP9 (0.998); ARP7 (0.997); RSC30 (0.997); RSC58 (0.997); RSC9 (0.996); RSC3 (0.996); SFH1 (0.994); RTT102 (0.988); RSC2 (0.98); SNF5 (0.979); HTL1 (0.979); LDB7 (0.977); SWI3 (0.963); SNF2 (0.943); SNF12 (0.929)
Homologues (species, bitscore): PBRM1 (Homo sapiens, 77.4); Pbrm1 (Mus musculus, 117.9); pbrm1 (Danio rerio, 114.8); pbrm1 (Xenopus tropicalis, 105.5); polybromo (Drosophila melanogaster, 100.1); pbrm-1 (Caenorhabditis elegans, 85.1); AT1G76380 (Arabidopsis thaliana, 57.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:585358-588144:+ | gene-YGR056W_AKU4011 | rna-NM_001181185.1_AKU4011 | cds-NP_011570.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:21755-24541:+ | gene-YGR056W_BG1 | rna-NM_001181185.1_BG1 | cds-NP_011570.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:587640-590426:+ | gene-YGR056W_Bruggeman | rna-NM_001181185.1_Bruggeman | cds-NP_011570.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:586066-588852:+ | gene-YGR056W_CAT1 | rna-NM_001181185.1_CAT1 | cds-NP_011570.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:586672-589458:+ | gene-YGR056W_CBS1585 | rna-NM_001181185.1_CBS1585 | cds-NP_011570.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:587964-590750:+ | gene-YGR056W_CBS436 | rna-NM_001181185.1_CBS436 | cds-NP_011570.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:579467-582253:+ | gene-YGR056W_CBS6412 | rna-NM_001181185.1_CBS6412 | cds-NP_011570.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:583469-586255:+ | gene-YGR056W_CBS6413 | rna-NM_001181185.1_CBS6413 | cds-NP_011570.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:601378-604185:+ | gene-YGR056W_CENPK1137D | rna-NM_001181185.1_CENPK1137D | cds-NP_011570.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:573600-576386:+ | gene-YGR056W_EthanolRed | rna-NM_001181185.1_EthanolRed | cds-NP_011570.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:577084-579870:+ | gene-YGR056W_FaliES1 | rna-NM_001181185.1_FaliES1 | cds-NP_011570.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000435.1:28025-30811:+ | gene-YGR056W_JAY291 | rna-NM_001181185.1_JAY291 | cds-NP_011570.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:584275-587061:+ | gene-YGR056W_MUCL30387 | rna-NM_001181185.1_MUCL30387 | cds-NP_011570.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:587669-590455:+ | gene-YGR056W_MUCL30388 | rna-NM_001181185.1_MUCL30388 | cds-NP_011570.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:582489-585275:+ | gene-YGR056W_MUCL39482 | rna-NM_001181185.1_MUCL39482 | cds-NP_011570.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:592299-595085:+ | gene-YGR056W_MUCL42920 | rna-NM_001181185.1_MUCL42920 | cds-NP_011570.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:601661-604447:+ | gene-YGR056W_NCIM3186 | rna-NM_001181185.1_NCIM3186 | cds-NP_011570.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:576687-579473:+ | gene-YGR056W_NCYC1407 | rna-NM_001181185.1_NCYC1407 | cds-NP_011570.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:579927-582713:+ | gene-YGR056W_PE2H3 | rna-NM_001181185.1_PE2H3 | cds-NP_011570.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:585034-587820:+ | gene-YGR056W_PE2H4 | rna-NM_001181185.1_PE2H4 | cds-NP_011570.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:601661-604447:+ | gene-YGR056W_S288C | rna-NM_001181185.1_S288C | cds-NP_011570.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:28125-30911:+ | gene-YGR056W_SA1 | rna-NM_001181185.1_SA1 | cds-NP_011570.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:596421-599207:+ | gene-YGR056W_ThermosaccDry | rna-NM_001181185.1_ThermosaccDry | cds-NP_011570.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:693347-696133:+ | gene-YGR056W_VR1 | rna-NM_001181185.1_VR1 | cds-NP_011570.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:51896-54682:+ | gene-YGR056W_ZTW1 | rna-NM_001181185.1_ZTW1 | cds-NP_011570.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:586908-589694:+ | gene-YGR056W_Sparadoxus | rna-NM_001181185.1_Sparadoxus | cds-NP_011570.1_Sparadoxus | 89.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |