Gene name: RSA4
Reference locus (S288C): YCR072C
Gene biotype: protein_coding
Description: WD-repeat protein involved in ribosome biogenesis; may interact with ribosomes; required for maturation and efficient intra-nuclear transport or pre-60S ribosomal subunits, localizes to the nucleolus; Belongs to the NLE1/RSA4 family
Top 10 interactors (score): NSA2 (0.999); NOG1 (0.999); MRT4 (0.999); CIC1 (0.999); MDN1 (0.999); RPF2 (0.999); RLP24 (0.999); NOG2 (0.999); ARX1 (0.999); RIX1 (0.999); ERB1 (0.999); NUG1 (0.999); SDA1 (0.999); IPI3 (0.999); RRS1 (0.998); NOP15 (0.998); YTM1 (0.998); PWP1 (0.997); NOP7 (0.997); NSA1 (0.997)
Homologues (species, bitscore): NLE1 (Homo sapiens, 466.1); Nle1 (Mus musculus, 458.8); nle1 (Danio rerio, 460.7); nle1 (Xenopus tropicalis, 431.0); Nle (Drosophila melanogaster, 411.8); W07E6.2 (Caenorhabditis elegans, 466.5); AT5G52820 (Arabidopsis thaliana, 471.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:235321-236868:- | gene-YCR072C_AKU4011 | rna-NM_001178782.1_AKU4011 | cds-NP_009997.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:93994-95541:- | gene-YCR072C_BG1 | rna-NM_001178782.1_BG1 | cds-NP_009997.2_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:231530-233077:- | gene-YCR072C_Bruggeman | rna-NM_001178782.1_Bruggeman | cds-NP_009997.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:242599-244146:- | gene-YCR072C_CAT1 | rna-NM_001178782.1_CAT1 | cds-NP_009997.2_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:230098-231645:- | gene-YCR072C_CBS1585 | rna-NM_001178782.1_CBS1585 | cds-NP_009997.2_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:241935-243482:- | gene-YCR072C_CBS436 | rna-NM_001178782.1_CBS436 | cds-NP_009997.2_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:221838-223385:- | gene-YCR072C_CBS6412 | rna-NM_001178782.1_CBS6412 | cds-NP_009997.2_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:236186-237733:- | gene-YCR072C_CBS6413 | rna-NM_001178782.1_CBS6413 | cds-NP_009997.2_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:240052-241599:- | gene-YCR072C_CENPK1137D | rna-NM_001178782.1_CENPK1137D | cds-NP_009997.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:231291-232838:- | gene-YCR072C_EthanolRed | rna-NM_001178782.1_EthanolRed | cds-NP_009997.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:236453-238000:- | gene-YCR072C_FaliES1 | rna-NM_001178782.1_FaliES1 | cds-NP_009997.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:50724-52271:+ | gene-YCR072C_JAY291 | rna-NM_001178782.1_JAY291 | cds-NP_009997.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:228255-229806:- | gene-YCR072C_MUCL30387 | rna-NM_001178782.1_MUCL30387 | cds-NP_009997.2_MUCL30387 | 98.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:228526-230073:- | gene-YCR072C_MUCL30388 | rna-NM_001178782.1_MUCL30388 | cds-NP_009997.2_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:236671-238218:- | gene-YCR072C_MUCL39482 | rna-NM_001178782.1_MUCL39482 | cds-NP_009997.2_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:233106-234653:- | gene-YCR072C_MUCL42920 | rna-NM_001178782.1_MUCL42920 | cds-NP_009997.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:240437-241984:- | gene-YCR072C_NCIM3186 | rna-NM_001178782.1_NCIM3186 | cds-NP_009997.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:237530-239077:- | gene-YCR072C_NCYC1407 | rna-NM_001178782.1_NCYC1407 | cds-NP_009997.2_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:252116-253663:- | gene-YCR072C_PE2H3 | rna-NM_001178782.1_PE2H3 | cds-NP_009997.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:240668-242215:- | gene-YCR072C_PE2H4 | rna-NM_001178782.1_PE2H4 | cds-NP_009997.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:240805-242352:- | gene-YCR072C_S288C | rna-NM_001178782.1_S288C | cds-NP_009997.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:40685-42232:- | gene-YCR072C_SA1 | rna-NM_001178782.1_SA1 | cds-NP_009997.2_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:236380-237927:- | gene-YCR072C_ThermosaccDry | rna-NM_001178782.1_ThermosaccDry | cds-NP_009997.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:247653-249200:- | gene-YCR072C_VR1 | rna-NM_001178782.1_VR1 | cds-NP_009997.2_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:234253-235800:- | gene-YCR072C_ZTW1 | rna-NM_001178782.1_ZTW1 | cds-NP_009997.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:268450-269997:- | gene-YCR072C_Sparadoxus | rna-NM_001178782.1_Sparadoxus | cds-NP_009997.2_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |