Gene name: RSA3
Reference locus (S288C): YLR221C
Gene biotype: protein_coding
Description: Ribosome assembly protein 3; Protein with a likely role in ribosomal maturation; required for accumulation of wild-type levels of large (60S) ribosomal subunits; binds to the helicase Dbp6p in pre-60S ribosomal particles in the nucleolus
Top 10 interactors (score): NOP15 (0.998); DBP6 (0.997); NOP4 (0.993); EBP2 (0.992); RLP7 (0.991); DBP3 (0.991); CIC1 (0.989); RLP24 (0.989); RRP15 (0.988); BRX1 (0.987); RPF2 (0.987); NIP7 (0.985); NOP8 (0.983); YBL028C (0.982); NOP2 (0.981); PUF6 (0.98); MRT4 (0.979); RPF1 (0.979); NOC2 (0.979); URB1 (0.978)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:532505-533167:- | gene-YLR221C_AKU4011 | rna-NM_001182108.1_AKU4011 | cds-NP_013322.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:89760-90422:- | gene-YLR221C_BG1 | rna-NM_001182108.1_BG1 | cds-NP_013322.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:572730-573392:- | gene-YLR221C_Bruggeman | rna-NM_001182108.1_Bruggeman | cds-NP_013322.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:572376-573038:- | gene-YLR221C_CAT1 | rna-NM_001182108.1_CAT1 | cds-NP_013322.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:567997-568659:- | gene-YLR221C_CBS1585 | rna-NM_001182108.1_CBS1585 | cds-NP_013322.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:558198-558860:- | gene-YLR221C_CBS436 | rna-NM_001182108.1_CBS436 | cds-NP_013322.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:536559-537221:- | gene-YLR221C_CBS6412 | rna-NM_001182108.1_CBS6412 | cds-NP_013322.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:568294-568956:- | gene-YLR221C_CBS6413 | rna-NM_001182108.1_CBS6413 | cds-NP_013322.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:563085-563747:- | gene-YLR221C_CENPK1137D | rna-NM_001182108.1_CENPK1137D | cds-NP_013322.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:532018-532680:- | gene-YLR221C_EthanolRed | rna-NM_001182108.1_EthanolRed | cds-NP_013322.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:560945-561607:- | gene-YLR221C_FaliES1 | rna-NM_001182108.1_FaliES1 | cds-NP_013322.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:87847-88509:- | gene-YLR221C_JAY291 | rna-NM_001182108.1_JAY291 | cds-NP_013322.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:573591-574253:- | gene-YLR221C_MUCL30387 | rna-NM_001182108.1_MUCL30387 | cds-NP_013322.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:577712-578374:- | gene-YLR221C_MUCL30388 | rna-NM_001182108.1_MUCL30388 | cds-NP_013322.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:568980-569642:- | gene-YLR221C_MUCL39482 | rna-NM_001182108.1_MUCL39482 | cds-NP_013322.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:569478-570140:- | gene-YLR221C_MUCL42920 | rna-NM_001182108.1_MUCL42920 | cds-NP_013322.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:578336-578998:- | gene-YLR221C_NCIM3186 | rna-NM_001182108.1_NCIM3186 | cds-NP_013322.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:561399-562061:- | gene-YLR221C_NCYC1407 | rna-NM_001182108.1_NCYC1407 | cds-NP_013322.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:565650-566312:- | gene-YLR221C_PE2H3 | rna-NM_001182108.1_PE2H3 | cds-NP_013322.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:565394-566056:- | gene-YLR221C_PE2H4 | rna-NM_001182108.1_PE2H4 | cds-NP_013322.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:578362-579024:- | gene-YLR221C_S288C | rna-NM_001182108.1_S288C | cds-NP_013322.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:87898-88560:- | gene-YLR221C_SA1 | rna-NM_001182108.1_SA1 | cds-NP_013322.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:563438-564100:- | gene-YLR221C_ThermosaccDry | rna-NM_001182108.1_ThermosaccDry | cds-NP_013322.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:574781-575443:- | gene-YLR221C_VR1 | rna-NM_001182108.1_VR1 | cds-NP_013322.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:87726-88388:- | gene-YLR221C_ZTW1 | rna-NM_001182108.1_ZTW1 | cds-NP_013322.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:549612-550274:- | gene-YLR221C_Sparadoxus | rna-NM_001182108.1_Sparadoxus | cds-NP_013322.1_Sparadoxus | 88.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |