Gene name: RSA1
Reference locus (S288C): YPL193W
Gene biotype: protein_coding
Description: Protein involved in the assembly of 60S ribosomal subunits; functionally interacts with Dbp6p; functions in a late nucleoplasmic step of the assembly
Top 10 interactors (score): SNU13 (0.993); PIH1 (0.976); HIT1 (0.947); TAH1 (0.928); NOP58 (0.917); BCD1 (0.898); PRP31 (0.892); DBP6 (0.822); NOP56 (0.789); RVB2 (0.754); RVB1 (0.74); HSC82 (0.719); SHQ1 (0.678); YER053C-A (0.655); HSP82 (0.627); RPL10 (0.619); MRPL51 (0.61); NOP8 (0.596); NOP53 (0.589); PXP1 (0.573)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:159249-160394:+ | gene-YPL193W_AKU4011 | rna-NM_001184007.1_AKU4011 | cds-NP_015131.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:365041-366186:+ | gene-YPL193W_BG1 | rna-NM_001184007.1_BG1 | cds-NP_015131.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:185235-186380:+ | gene-YPL193W_Bruggeman | rna-NM_001184007.1_Bruggeman | cds-NP_015131.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:181589-182734:+ | gene-YPL193W_CAT1 | rna-NM_001184007.1_CAT1 | cds-NP_015131.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:163438-164583:+ | gene-YPL193W_CBS1585 | rna-NM_001184007.1_CBS1585 | cds-NP_015131.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:178131-179276:+ | gene-YPL193W_CBS436 | rna-NM_001184007.1_CBS436 | cds-NP_015131.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:168237-169382:+ | gene-YPL193W_CBS6412 | rna-NM_001184007.1_CBS6412 | cds-NP_015131.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:159610-160755:+ | gene-YPL193W_CBS6413 | rna-NM_001184007.1_CBS6413 | cds-NP_015131.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:181350-182495:+ | gene-YPL193W_CENPK1137D | rna-NM_001184007.1_CENPK1137D | cds-NP_015131.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:158369-159514:+ | gene-YPL193W_EthanolRed | rna-NM_001184007.1_EthanolRed | cds-NP_015131.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:165740-166885:+ | gene-YPL193W_FaliES1 | rna-NM_001184007.1_FaliES1 | cds-NP_015131.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000267.1:6767-7912:+ | gene-YPL193W_JAY291 | rna-NM_001184007.1_JAY291 | cds-NP_015131.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:176622-177767:+ | gene-YPL193W_MUCL30387 | rna-NM_001184007.1_MUCL30387 | cds-NP_015131.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:174777-175922:+ | gene-YPL193W_MUCL30388 | rna-NM_001184007.1_MUCL30388 | cds-NP_015131.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:156767-157912:+ | gene-YPL193W_MUCL39482 | rna-NM_001184007.1_MUCL39482 | cds-NP_015131.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:213610-214755:+ | gene-YPL193W_MUCL42920 | rna-NM_001184007.1_MUCL42920 | cds-NP_015131.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:181386-182531:+ | gene-YPL193W_NCIM3186 | rna-NM_001184007.1_NCIM3186 | cds-NP_015131.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:163134-164279:+ | gene-YPL193W_NCYC1407 | rna-NM_001184007.1_NCYC1407 | cds-NP_015131.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:170752-171897:+ | gene-YPL193W_PE2H3 | rna-NM_001184007.1_PE2H3 | cds-NP_015131.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:170395-171540:+ | gene-YPL193W_PE2H4 | rna-NM_001184007.1_PE2H4 | cds-NP_015131.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:181403-182548:+ | gene-YPL193W_S288C | rna-NM_001184007.1_S288C | cds-NP_015131.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:190803-191948:- | gene-YPL193W_SA1 | rna-NM_001184007.1_SA1 | cds-NP_015131.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:165519-166664:+ | gene-YPL193W_ThermosaccDry | rna-NM_001184007.1_ThermosaccDry | cds-NP_015131.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:180526-181671:+ | gene-YPL193W_VR1 | rna-NM_001184007.1_VR1 | cds-NP_015131.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:164872-166017:+ | gene-YPL193W_ZTW1 | rna-NM_001184007.1_ZTW1 | cds-NP_015131.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:166423-167568:+ | gene-YPL193W_Sparadoxus | rna-NM_001184007.1_Sparadoxus | cds-NP_015131.1_Sparadoxus | 83.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |