Gene name: RRT6
Reference locus (S288C): YGL146C
Gene biotype: protein_coding
Description: Regulator of rDNA transcription protein 6; Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; contains two putative transmembrane spans, but no significant homology to other known proteins
Top 10 interactors (score): YGL140C (0.919); ERP3 (0.906); ERP6 (0.894); FLC3 (0.865); GPI10 (0.813); EMP24 (0.781); ROG1 (0.747); ARO2 (0.716); SEC20 (0.712); ERP2 (0.712); ERV25 (0.697); HUL5 (0.691); RPL9A (0.614)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:231338-232273:- | gene-YGL146C_AKU4011 | rna-NM_001181011.1_AKU4011 | cds-NP_011369.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:172678-173613:+ | gene-YGL146C_BG1 | rna-NM_001181011.1_BG1 | cds-NP_011369.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:233514-234449:- | gene-YGL146C_Bruggeman | rna-NM_001181011.1_Bruggeman | cds-NP_011369.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:229355-230290:- | gene-YGL146C_CAT1 | rna-NM_001181011.1_CAT1 | cds-NP_011369.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:234720-235655:- | gene-YGL146C_CBS1585 | rna-NM_001181011.1_CBS1585 | cds-NP_011369.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:229312-230247:- | gene-YGL146C_CBS436 | rna-NM_001181011.1_CBS436 | cds-NP_011369.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:220930-221865:- | gene-YGL146C_CBS6412 | rna-NM_001181011.1_CBS6412 | cds-NP_011369.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:229276-230211:- | gene-YGL146C_CBS6413 | rna-NM_001181011.1_CBS6413 | cds-NP_011369.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:229013-229948:- | gene-YGL146C_CENPK1137D | rna-NM_001181011.1_CENPK1137D | cds-NP_011369.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:221479-222414:- | gene-YGL146C_EthanolRed | rna-NM_001181011.1_EthanolRed | cds-NP_011369.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:222725-223660:- | gene-YGL146C_FaliES1 | rna-NM_001181011.1_FaliES1 | cds-NP_011369.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000090.1:72554-73489:- | gene-YGL146C_JAY291 | rna-NM_001181011.1_JAY291 | cds-NP_011369.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:230733-231668:- | gene-YGL146C_MUCL30387 | rna-NM_001181011.1_MUCL30387 | cds-NP_011369.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:233848-234783:- | gene-YGL146C_MUCL30388 | rna-NM_001181011.1_MUCL30388 | cds-NP_011369.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:231501-232436:- | gene-YGL146C_MUCL39482 | rna-NM_001181011.1_MUCL39482 | cds-NP_011369.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:234722-235657:- | gene-YGL146C_MUCL42920 | rna-NM_001181011.1_MUCL42920 | cds-NP_011369.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:228751-229686:- | gene-YGL146C_NCIM3186 | rna-NM_001181011.1_NCIM3186 | cds-NP_011369.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:222991-223926:- | gene-YGL146C_NCYC1407 | rna-NM_001181011.1_NCYC1407 | cds-NP_011369.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:224857-225792:- | gene-YGL146C_PE2H3 | rna-NM_001181011.1_PE2H3 | cds-NP_011369.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:229852-230787:- | gene-YGL146C_PE2H4 | rna-NM_001181011.1_PE2H4 | cds-NP_011369.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:228751-229686:- | gene-YGL146C_S288C | rna-NM_001181011.1_S288C | cds-NP_011369.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000081.1:25063-25998:+ | gene-YGL146C_SA1 | rna-NM_001181011.1_SA1 | cds-NP_011369.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:222954-223889:- | gene-YGL146C_ThermosaccDry | rna-NM_001181011.1_ThermosaccDry | cds-NP_011369.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:229771-230706:- | gene-YGL146C_VR1 | rna-NM_001181011.1_VR1 | cds-NP_011369.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:221061-221996:- | gene-YGL146C_ZTW1 | rna-NM_001181011.1_ZTW1 | cds-NP_011369.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:227110-228045:- | gene-YGL146C_Sparadoxus | rna-NM_001181011.1_Sparadoxus | cds-NP_011369.1_Sparadoxus | 87.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |