Gene name: RRT5
Reference locus (S288C): YFR032C
Gene biotype: protein_coding
Description: Regulator of rDNA transcription protein 5; Putative protein of unknown function; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation
Top 10 interactors (score): YFL012W (0.872); YFR006W (0.841); YGL138C (0.78); LOH1 (0.748); YGR017W (0.748); CDA1 (0.709); SNZ3 (0.696); WWM1 (0.671); RTS3 (0.651); MIC19 (0.617); ATP10 (0.616); SWP82 (0.612); IGD1 (0.573); ATG38 (0.572); RPS21B (0.572); BNA1 (0.569); COX23 (0.569); RPL31B (0.525); MOB2 (0.497); TOA1 (0.495)
Homologues (species, bitscore): PAB8 (Arabidopsis thaliana, 56.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:212245-213108:- | gene-YFR032C_AKU4011 | rna-NM_001179997.1_AKU4011 | cds-NP_116689.1_AKU4011 | 97.7 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:47928-48797:+ | gene-YFR032C_BG1 | rna-NM_001179997.1_BG1 | cds-NP_116689.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:215901-216764:- | gene-YFR032C_Bruggeman | rna-NM_001179997.1_Bruggeman | cds-NP_116689.1_Bruggeman | 97.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:217877-218740:- | gene-YFR032C_CAT1 | rna-NM_001179997.1_CAT1 | cds-NP_116689.1_CAT1 | 98.8 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:213737-214600:- | gene-YFR032C_CBS1585 | rna-NM_001179997.1_CBS1585 | cds-NP_116689.1_CBS1585 | 97.7 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:186699-187568:- | gene-YFR032C_CBS436 | rna-NM_001179997.1_CBS436 | cds-NP_116689.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:212814-213677:- | gene-YFR032C_CBS6412 | rna-NM_001179997.1_CBS6412 | cds-NP_116689.1_CBS6412 | 97.7 | 99.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:215472-216335:- | gene-YFR032C_CBS6413 | rna-NM_001179997.1_CBS6413 | cds-NP_116689.1_CBS6413 | 97.5 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:218189-219058:- | gene-YFR032C_CENPK1137D | rna-NM_001179997.1_CENPK1137D | cds-NP_116689.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:211352-212215:- | gene-YFR032C_EthanolRed | rna-NM_001179997.1_EthanolRed | cds-NP_116689.1_EthanolRed | 97.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:213003-213866:- | gene-YFR032C_FaliES1 | rna-NM_001179997.1_FaliES1 | cds-NP_116689.1_FaliES1 | 97.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:16137-17006:- | gene-YFR032C_JAY291 | rna-NM_001179997.1_JAY291 | cds-NP_116689.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:216337-217206:- | gene-YFR032C_MUCL30387 | rna-NM_001179997.1_MUCL30387 | cds-NP_116689.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:211829-212692:- | gene-YFR032C_MUCL30388 | rna-NM_001179997.1_MUCL30388 | cds-NP_116689.1_MUCL30388 | 97.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:211655-212518:- | gene-YFR032C_MUCL39482 | rna-NM_001179997.1_MUCL39482 | cds-NP_116689.1_MUCL39482 | 97.5 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:211254-212123:- | gene-YFR032C_MUCL42920 | rna-NM_001179997.1_MUCL42920 | cds-NP_116689.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:222089-222958:- | gene-YFR032C_NCIM3186 | rna-NM_001179997.1_NCIM3186 | cds-NP_116689.1_NCIM3186 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:212537-213400:- | gene-YFR032C_NCYC1407 | rna-NM_001179997.1_NCYC1407 | cds-NP_116689.1_NCYC1407 | 97.4 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:254544-255413:- | gene-YFR032C_PE2H3 | rna-NM_001179997.1_PE2H3 | cds-NP_116689.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:254092-254961:- | gene-YFR032C_PE2H4 | rna-NM_001179997.1_PE2H4 | cds-NP_116689.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:222090-222959:- | gene-YFR032C_S288C | rna-NM_001179997.1_S288C | cds-NP_116689.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:101517-102380:+ | gene-YFR032C_SA1 | rna-NM_001179997.1_SA1 | cds-NP_116689.1_SA1 | 98.5 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:212160-213023:- | gene-YFR032C_ThermosaccDry | rna-NM_001179997.1_ThermosaccDry | cds-NP_116689.1_ThermosaccDry | 97.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:227916-228785:- | gene-YFR032C_VR1 | rna-NM_001179997.1_VR1 | cds-NP_116689.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:142631-143494:- | gene-YFR032C_ZTW1 | rna-NM_001179997.1_ZTW1 | cds-NP_116689.1_ZTW1 | 97.3 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:235829-236668:- | gene-YFR032C_Sparadoxus | rna-NM_001179997.1_Sparadoxus | cds-NP_116689.1_Sparadoxus | 85.4 | 96.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |