Gene name: RRT15
Reference locus (S288C): YLR162W-A
Gene biotype: protein_coding
Description: Regulator of rDNA transcription protein 15; Putative protein of unknown function; identified by fungal homology comparisons and RT-PCR; identified in a screen for mutants with decreased levels of rDNA transcription
Top 10 interactors (score): YLR152C (0.848); PCH2 (0.746); SHH4 (0.499)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:444549-444697:+ | gene-YLR162W-A_AKU4011 | rna-NM_001184566.1_AKU4011 | cds-NP_878128.1_AKU4011 | 77.7 | 78.8 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:1745-1933:+ | gene-YLR162W-A_BG1 | rna-NM_001184566.1_BG1 | cds-NP_878128.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:484857-485045:+ | gene-YLR162W-A_Bruggeman | rna-NM_001184566.1_Bruggeman | cds-NP_878128.1_Bruggeman | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:484387-484575:+ | gene-YLR162W-A_CAT1 | rna-NM_001184566.1_CAT1 | cds-NP_878128.1_CAT1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:480006-480194:+ | gene-YLR162W-A_CBS1585 | rna-NM_001184566.1_CBS1585 | cds-NP_878128.1_CBS1585 | 97.8 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:470153-470341:+ | gene-YLR162W-A_CBS436 | rna-NM_001184566.1_CBS436 | cds-NP_878128.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:448578-448765:+ | gene-YLR162W-A_CBS6412 | rna-NM_001184566.1_CBS6412 | cds-NP_878128.1_CBS6412 | 97.8 | 99.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:480312-480500:+ | gene-YLR162W-A_CBS6413 | rna-NM_001184566.1_CBS6413 | cds-NP_878128.1_CBS6413 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | JH711441.1:1-136:- | gene-YLR162W-A_CENPK1137D | rna-NM_001184566.1_CENPK1137D | cds-NP_878128.1_CENPK1137D | 70.8 | 71.9 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:444031-444218:+ | gene-YLR162W-A_EthanolRed | rna-NM_001184566.1_EthanolRed | cds-NP_878128.1_EthanolRed | 97.8 | 99.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:472957-473145:+ | gene-YLR162W-A_FaliES1 | rna-NM_001184566.1_FaliES1 | cds-NP_878128.1_FaliES1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000372.1:1-154:- | gene-YLR162W-A_JAY291 | rna-NM_001184566.1_JAY291 | cds-NP_878128.1_JAY291 | 77.2 | 81.4 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:484878-485066:+ | gene-YLR162W-A_MUCL30387 | rna-NM_001184566.1_MUCL30387 | cds-NP_878128.1_MUCL30387 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:489810-489998:+ | gene-YLR162W-A_MUCL30388 | rna-NM_001184566.1_MUCL30388 | cds-NP_878128.1_MUCL30388 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:481003-481191:+ | gene-YLR162W-A_MUCL39482 | rna-NM_001184566.1_MUCL39482 | cds-NP_878128.1_MUCL39482 | 97.8 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | False | True |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:481582-481770:+ | gene-YLR162W-A_MUCL42920 | rna-NM_001184566.1_MUCL42920 | cds-NP_878128.1_MUCL42920 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:490380-490568:+ | gene-YLR162W-A_NCIM3186 | rna-NM_001184566.1_NCIM3186 | cds-NP_878128.1_NCIM3186 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:473427-473615:+ | gene-YLR162W-A_NCYC1407 | rna-NM_001184566.1_NCYC1407 | cds-NP_878128.1_NCYC1407 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:477685-477873:+ | gene-YLR162W-A_PE2H3 | rna-NM_001184566.1_PE2H3 | cds-NP_878128.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:477429-477617:+ | gene-YLR162W-A_PE2H4 | rna-NM_001184566.1_PE2H4 | cds-NP_878128.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:490406-490594:+ | gene-YLR162W-A_S288C | rna-NM_001184566.1_S288C | cds-NP_878128.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:1-143:+ | gene-YLR162W-A_SA1 | rna-NM_001184566.1_SA1 | cds-NP_878128.1_SA1 | 75.1 | 75.6 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:475482-475670:+ | gene-YLR162W-A_ThermosaccDry | rna-NM_001184566.1_ThermosaccDry | cds-NP_878128.1_ThermosaccDry | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:486797-486985:+ | gene-YLR162W-A_VR1 | rna-NM_001184566.1_VR1 | cds-NP_878128.1_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |