Gene name: RRT14
Reference locus (S288C): YIL127C
Gene biotype: protein_coding
Description: Regulator of rDNA transcription protein 14; Putative protein of unknown function; identified in a screen for mutants with decreased levels of rDNA transcription; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; predicted to be involved in ribosome biogenesis
Top 10 interactors (score): FCF2 (0.996); UTP14 (0.995); LCP5 (0.994); UTP11 (0.993); ENP2 (0.99); BFR2 (0.989); YBL028C (0.986); FAF1 (0.984); SAS10 (0.984); NOP14 (0.982); UTP6 (0.98); BMT5 (0.98); TMA16 (0.978); YCR016W (0.976); SOF1 (0.975); BMS1 (0.975); UTP9 (0.973); KRR1 (0.972); KRE33 (0.971); NOP15 (0.969)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:118244-118864:- | gene-YIL127C_AKU4011 | rna-NM_001179475.1_AKU4011 | cds-NP_012139.1_AKU4011 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:18895-19515:+ | gene-YIL127C_BG1 | rna-NM_001179475.1_BG1 | cds-NP_012139.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:120994-121614:- | gene-YIL127C_Bruggeman | rna-NM_001179475.1_Bruggeman | cds-NP_012139.1_Bruggeman | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:114874-115494:- | gene-YIL127C_CAT1 | rna-NM_001179475.1_CAT1 | cds-NP_012139.1_CAT1 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:118476-119096:- | gene-YIL127C_CBS1585 | rna-NM_001179475.1_CBS1585 | cds-NP_012139.1_CBS1585 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:109613-110233:- | gene-YIL127C_CBS436 | rna-NM_001179475.1_CBS436 | cds-NP_012139.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:115963-116583:- | gene-YIL127C_CBS6412 | rna-NM_001179475.1_CBS6412 | cds-NP_012139.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:109723-110343:- | gene-YIL127C_CBS6413 | rna-NM_001179475.1_CBS6413 | cds-NP_012139.1_CBS6413 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:108734-109352:- | gene-YIL127C_CENPK1137D | rna-NM_001179475.1_CENPK1137D | cds-NP_012139.1_CENPK1137D | 98.8 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:103528-104148:- | gene-YIL127C_EthanolRed | rna-NM_001179475.1_EthanolRed | cds-NP_012139.1_EthanolRed | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:119579-120199:- | gene-YIL127C_FaliES1 | rna-NM_001179475.1_FaliES1 | cds-NP_012139.1_FaliES1 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000383.1:29134-29754:+ | gene-YIL127C_JAY291 | rna-NM_001179475.1_JAY291 | cds-NP_012139.1_JAY291 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:118849-119469:- | gene-YIL127C_MUCL30387 | rna-NM_001179475.1_MUCL30387 | cds-NP_012139.1_MUCL30387 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:118433-119053:- | gene-YIL127C_MUCL30388 | rna-NM_001179475.1_MUCL30388 | cds-NP_012139.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:119421-120041:- | gene-YIL127C_MUCL39482 | rna-NM_001179475.1_MUCL39482 | cds-NP_012139.1_MUCL39482 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:122607-123227:- | gene-YIL127C_MUCL42920 | rna-NM_001179475.1_MUCL42920 | cds-NP_012139.1_MUCL42920 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:117024-117644:- | gene-YIL127C_NCIM3186 | rna-NM_001179475.1_NCIM3186 | cds-NP_012139.1_NCIM3186 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:123407-124027:- | gene-YIL127C_NCYC1407 | rna-NM_001179475.1_NCYC1407 | cds-NP_012139.1_NCYC1407 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:118087-118707:- | gene-YIL127C_PE2H3 | rna-NM_001179475.1_PE2H3 | cds-NP_012139.1_PE2H3 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:112062-112682:- | gene-YIL127C_PE2H4 | rna-NM_001179475.1_PE2H4 | cds-NP_012139.1_PE2H4 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:117024-117644:- | gene-YIL127C_S288C | rna-NM_001179475.1_S288C | cds-NP_012139.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:65613-66233:+ | gene-YIL127C_SA1 | rna-NM_001179475.1_SA1 | cds-NP_012139.1_SA1 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:118236-118856:- | gene-YIL127C_ThermosaccDry | rna-NM_001179475.1_ThermosaccDry | cds-NP_012139.1_ThermosaccDry | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:115396-116016:- | gene-YIL127C_VR1 | rna-NM_001179475.1_VR1 | cds-NP_012139.1_VR1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:93172-93792:- | gene-YIL127C_ZTW1 | rna-NM_001179475.1_ZTW1 | cds-NP_012139.1_ZTW1 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:110984-111604:- | gene-YIL127C_Sparadoxus | rna-NM_001179475.1_Sparadoxus | cds-NP_012139.1_Sparadoxus | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |