Gene name: RRT13
Reference locus (S288C): YER066W
Gene biotype: protein_coding
Description: Regulator of rDNA transcription protein 13; Putative protein of unknown function; non-essential gene identified in a screen for mutants with decreased levels of rDNA transcription
Top 10 interactors (score): CDC53 (0.993); SKP1 (0.993); HRT1 (0.916); RPL40B (0.869); RPL40A (0.869); CDC34 (0.765); CUL3 (0.75); CDC6 (0.732); HMS1 (0.645); TAF5 (0.644); UBP2 (0.625); DOP1 (0.612); ASC1 (0.583); RTT101 (0.579); TEP1 (0.576); SWD3 (0.54); SSN3 (0.524); GLE2 (0.517); STE4 (0.497); YAH1 (0.493)
Homologues (species, bitscore): FBXW7 (Homo sapiens, 76.6); Fbxw7 (Mus musculus, 76.3); FBXW7 (Danio rerio, 81.6); fbxw7 (Xenopus tropicalis, 76.3); ago (Drosophila melanogaster, 73.9); sel-10 (Caenorhabditis elegans, 67.8); AT2G43770 (Arabidopsis thaliana, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:284018-284575:+ | gene-YER066W_AKU4011 | rna-NM_001178957.1_AKU4011 | cds-NP_010988.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:141202-141759:- | gene-YER066W_BG1 | rna-NM_001178957.1_BG1 | cds-NP_010988.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:293618-294175:+ | gene-YER066W_Bruggeman | rna-NM_001178957.1_Bruggeman | cds-NP_010988.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:287470-288027:+ | gene-YER066W_CAT1 | rna-NM_001178957.1_CAT1 | cds-NP_010988.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:283870-284427:+ | gene-YER066W_CBS1585 | rna-NM_001178957.1_CBS1585 | cds-NP_010988.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:286027-286584:+ | gene-YER066W_CBS436 | rna-NM_001178957.1_CBS436 | cds-NP_010988.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:283340-283897:+ | gene-YER066W_CBS6412 | rna-NM_001178957.1_CBS6412 | cds-NP_010988.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:289350-289907:+ | gene-YER066W_CBS6413 | rna-NM_001178957.1_CBS6413 | cds-NP_010988.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:288070-288627:+ | gene-YER066W_CENPK1137D | rna-NM_001178957.1_CENPK1137D | cds-NP_010988.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:284357-284914:+ | gene-YER066W_EthanolRed | rna-NM_001178957.1_EthanolRed | cds-NP_010988.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:284809-285366:+ | gene-YER066W_FaliES1 | rna-NM_001178957.1_FaliES1 | cds-NP_010988.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000153.1:1-430:+ | gene-YER066W_JAY291 | rna-NM_001178957.1_JAY291 | cds-NP_010988.1_JAY291 | 77.0 | 77.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:289016-289573:+ | gene-YER066W_MUCL30387 | rna-NM_001178957.1_MUCL30387 | cds-NP_010988.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:284685-285242:+ | gene-YER066W_MUCL30388 | rna-NM_001178957.1_MUCL30388 | cds-NP_010988.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:282906-283463:+ | gene-YER066W_MUCL39482 | rna-NM_001178957.1_MUCL39482 | cds-NP_010988.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:290148-290705:+ | gene-YER066W_MUCL42920 | rna-NM_001178957.1_MUCL42920 | cds-NP_010988.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:290241-290798:+ | gene-YER066W_NCIM3186 | rna-NM_001178957.1_NCIM3186 | cds-NP_010988.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:287972-288529:+ | gene-YER066W_NCYC1407 | rna-NM_001178957.1_NCYC1407 | cds-NP_010988.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:298624-299181:+ | gene-YER066W_PE2H3 | rna-NM_001178957.1_PE2H3 | cds-NP_010988.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:288565-289122:+ | gene-YER066W_PE2H4 | rna-NM_001178957.1_PE2H4 | cds-NP_010988.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:290242-290799:+ | gene-YER066W_S288C | rna-NM_001178957.1_S288C | cds-NP_010988.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:1-441:+ | gene-YER066W_SA1 | rna-NM_001178957.1_SA1 | cds-NP_010988.1_SA1 | 78.8 | 79.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:285605-286162:+ | gene-YER066W_ThermosaccDry | rna-NM_001178957.1_ThermosaccDry | cds-NP_010988.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:286302-286859:+ | gene-YER066W_VR1 | rna-NM_001178957.1_VR1 | cds-NP_010988.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:282774-283331:+ | gene-YER066W_ZTW1 | rna-NM_001178957.1_ZTW1 | cds-NP_010988.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |