Gene name: RRT1
Reference locus (S288C): YBL048W
Gene biotype: protein_coding
Description: Regulator of rDNA transcription protein 1; Protein of unknown function; identified in a screen for mutants with increased levels of rDNA transcription; dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data
Top 10 interactors (score): MOH1 (0.99); COS4 (0.78); COS8 (0.749); TMA10 (0.715); YJL132W (0.659); TKL2 (0.585); YNR066C (0.569); YBR285W (0.542); HSP26 (0.524); ECM30 (0.495); UBP15 (0.495); HSP78 (0.45); YJR061W (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:120888-121199:+ | gene-YBL048W_AKU4011 | rna-NM_001348869.1_AKU4011 | cds-NP_001335744.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:111730-112040:+ | gene-YBL048W_BG1 | rna-NM_001348869.1_BG1 | cds-NP_001335744.1_BG1 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:121494-121804:+ | gene-YBL048W_Bruggeman | rna-NM_001348869.1_Bruggeman | cds-NP_001335744.1_Bruggeman | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:124128-124439:+ | gene-YBL048W_CAT1 | rna-NM_001348869.1_CAT1 | cds-NP_001335744.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:113447-113758:+ | gene-YBL048W_CBS1585 | rna-NM_001348869.1_CBS1585 | cds-NP_001335744.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:121953-122263:+ | gene-YBL048W_CBS436 | rna-NM_001348869.1_CBS436 | cds-NP_001335744.1_CBS436 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:111593-111904:+ | gene-YBL048W_CBS6412 | rna-NM_001348869.1_CBS6412 | cds-NP_001335744.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:119024-119335:+ | gene-YBL048W_CBS6413 | rna-NM_001348869.1_CBS6413 | cds-NP_001335744.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:121059-121370:+ | gene-YBL048W_CENPK1137D | rna-NM_001348869.1_CENPK1137D | cds-NP_001335744.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:134878-135189:+ | gene-YBL048W_EthanolRed | rna-NM_001348869.1_EthanolRed | cds-NP_001335744.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:135731-136042:+ | gene-YBL048W_FaliES1 | rna-NM_001348869.1_FaliES1 | cds-NP_001335744.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:38348-38658:+ | gene-YBL048W_JAY291 | rna-NM_001348869.1_JAY291 | cds-NP_001335744.1_JAY291 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:120869-121180:+ | gene-YBL048W_MUCL30387 | rna-NM_001348869.1_MUCL30387 | cds-NP_001335744.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:122144-122455:+ | gene-YBL048W_MUCL30388 | rna-NM_001348869.1_MUCL30388 | cds-NP_001335744.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:113627-113938:+ | gene-YBL048W_MUCL39482 | rna-NM_001348869.1_MUCL39482 | cds-NP_001335744.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:120461-120771:+ | gene-YBL048W_MUCL42920 | rna-NM_001348869.1_MUCL42920 | cds-NP_001335744.1_MUCL42920 | 99.3 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:127096-127407:+ | gene-YBL048W_NCIM3186 | rna-NM_001348869.1_NCIM3186 | cds-NP_001335744.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:114773-115084:+ | gene-YBL048W_NCYC1407 | rna-NM_001348869.1_NCYC1407 | cds-NP_001335744.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:121025-121335:+ | gene-YBL048W_PE2H3 | rna-NM_001348869.1_PE2H3 | cds-NP_001335744.1_PE2H3 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:118669-118979:+ | gene-YBL048W_PE2H4 | rna-NM_001348869.1_PE2H4 | cds-NP_001335744.1_PE2H4 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:127299-127610:+ | gene-YBL048W_S288C | rna-NM_001348869.1_S288C | cds-NP_001335744.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:11881-12191:+ | gene-YBL048W_SA1 | rna-NM_001348869.1_SA1 | cds-NP_001335744.1_SA1 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:135692-136003:+ | gene-YBL048W_ThermosaccDry | rna-NM_001348869.1_ThermosaccDry | cds-NP_001335744.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:117860-118170:+ | gene-YBL048W_VR1 | rna-NM_001348869.1_VR1 | cds-NP_001335744.1_VR1 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:112400-112711:+ | gene-YBL048W_ZTW1 | rna-NM_001348869.1_ZTW1 | cds-NP_001335744.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |