Gene name: RRP9
Reference locus (S288C): YPR137W
Gene biotype: protein_coding
Description: Ribosomal RNA-processing protein 9; Protein involved in pre-rRNA processing; associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein
Top 10 interactors (score): UTP13 (0.999); BMS1 (0.999); UTP8 (0.999); BFR2 (0.999); RRP5 (0.999); NOP58 (0.999); DIM1 (0.999); BUD21 (0.999); RCL1 (0.999); FCF1 (0.999); RRP7 (0.999); KRR1 (0.999); NOP1 (0.999); UTP18 (0.999); IMP4 (0.999); ENP1 (0.999); SAS10 (0.999); DBP8 (0.999); UTP25 (0.999); RRP12 (0.999)
Homologues (species, bitscore): RRP9 (Homo sapiens, 210.7); Rrp9 (Mus musculus, 201.8); rrp9 (Danio rerio, 206.8); RRP9 (Xenopus tropicalis, 209.5); U3-55K (Drosophila melanogaster, 146.0); T02H6.1 (Caenorhabditis elegans, 171.4); YAO (Arabidopsis thaliana, 141.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:774045-775766:+ | gene-YPR137W_AKU4011 | rna-NM_001184234.1_AKU4011 | cds-NP_015463.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:121600-123321:- | gene-YPR137W_BG1 | rna-NM_001184234.1_BG1 | cds-NP_015463.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:854695-856416:+ | gene-YPR137W_Bruggeman | rna-NM_001184234.1_Bruggeman | cds-NP_015463.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:896610-898331:+ | gene-YPR137W_CAT1 | rna-NM_001184234.1_CAT1 | cds-NP_015463.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:778301-780022:+ | gene-YPR137W_CBS1585 | rna-NM_001184234.1_CBS1585 | cds-NP_015463.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:792775-794496:+ | gene-YPR137W_CBS436 | rna-NM_001184234.1_CBS436 | cds-NP_015463.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:781025-782746:+ | gene-YPR137W_CBS6412 | rna-NM_001184234.1_CBS6412 | cds-NP_015463.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:775747-777468:+ | gene-YPR137W_CBS6413 | rna-NM_001184234.1_CBS6413 | cds-NP_015463.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:802414-804135:+ | gene-YPR137W_CENPK1137D | rna-NM_001184234.1_CENPK1137D | cds-NP_015463.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1096211-1097932:+ | gene-YPR137W_EthanolRed | rna-NM_001184234.1_EthanolRed | cds-NP_015463.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:775758-777479:+ | gene-YPR137W_FaliES1 | rna-NM_001184234.1_FaliES1 | cds-NP_015463.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000036.1:33035-34756:+ | gene-YPR137W_JAY291 | rna-NM_001184234.1_JAY291 | cds-NP_015463.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:794886-796607:+ | gene-YPR137W_MUCL30387 | rna-NM_001184234.1_MUCL30387 | cds-NP_015463.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:794851-796572:+ | gene-YPR137W_MUCL30388 | rna-NM_001184234.1_MUCL30388 | cds-NP_015463.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:770809-772530:+ | gene-YPR137W_MUCL39482 | rna-NM_001184234.1_MUCL39482 | cds-NP_015463.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:834606-836327:+ | gene-YPR137W_MUCL42920 | rna-NM_001184234.1_MUCL42920 | cds-NP_015463.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:802342-804063:+ | gene-YPR137W_NCIM3186 | rna-NM_001184234.1_NCIM3186 | cds-NP_015463.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:779402-781123:+ | gene-YPR137W_NCYC1407 | rna-NM_001184234.1_NCYC1407 | cds-NP_015463.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:786123-787844:+ | gene-YPR137W_PE2H3 | rna-NM_001184234.1_PE2H3 | cds-NP_015463.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:785771-787492:+ | gene-YPR137W_PE2H4 | rna-NM_001184234.1_PE2H4 | cds-NP_015463.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:802359-804080:+ | gene-YPR137W_S288C | rna-NM_001184234.1_S288C | cds-NP_015463.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:100155-101876:+ | gene-YPR137W_SA1 | rna-NM_001184234.1_SA1 | cds-NP_015463.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:775203-776924:+ | gene-YPR137W_ThermosaccDry | rna-NM_001184234.1_ThermosaccDry | cds-NP_015463.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:797028-798749:+ | gene-YPR137W_VR1 | rna-NM_001184234.1_VR1 | cds-NP_015463.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:778957-780678:+ | gene-YPR137W_ZTW1 | rna-NM_001184234.1_ZTW1 | cds-NP_015463.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:780885-782606:+ | gene-YPR137W_Sparadoxus | rna-NM_001184234.1_Sparadoxus | cds-NP_015463.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |