Gene name: RRP7
Reference locus (S288C): YCL031C
Gene biotype: protein_coding
Description: Ribosomal RNA-processing protein 7; Essential protein involved in rRNA processing and ribosome biogenesis; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): UTP10 (0.999); PWP2 (0.999); UTP21 (0.999); UTP20 (0.999); NOC4 (0.999); ENP2 (0.999); NOP14 (0.999); UTP7 (0.999); CKA1 (0.999); BMS1 (0.999); NAN1 (0.999); UTP15 (0.999); SOF1 (0.999); KRE33 (0.999); MPP10 (0.999); DIP2 (0.999); UTP22 (0.999); RRP9 (0.999); RRP5 (0.999); UTP13 (0.999)
Homologues (species, bitscore): RRP7A (Homo sapiens, 57.4); Rrp7a (Mus musculus, 57.4); rrp7a (Danio rerio, 52.0); rrp7a (Xenopus tropicalis, 53.5); CG9107 (Drosophila melanogaster, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:66038-66931:- | gene-YCL031C_AKU4011 | rna-NM_001178676.1_AKU4011 | cds-NP_009899.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:80181-81074:+ | gene-YCL031C_BG1 | rna-NM_001178676.1_BG1 | cds-NP_009899.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:54228-55121:- | gene-YCL031C_Bruggeman | rna-NM_001178676.1_Bruggeman | cds-NP_009899.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:65835-66728:- | gene-YCL031C_CAT1 | rna-NM_001178676.1_CAT1 | cds-NP_009899.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:66727-67620:- | gene-YCL031C_CBS1585 | rna-NM_001178676.1_CBS1585 | cds-NP_009899.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:65169-66062:- | gene-YCL031C_CBS436 | rna-NM_001178676.1_CBS436 | cds-NP_009899.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:54135-55028:- | gene-YCL031C_CBS6412 | rna-NM_001178676.1_CBS6412 | cds-NP_009899.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:65503-66396:- | gene-YCL031C_CBS6413 | rna-NM_001178676.1_CBS6413 | cds-NP_009899.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:64272-65165:- | gene-YCL031C_CENPK1137D | rna-NM_001178676.1_CENPK1137D | cds-NP_009899.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:64061-64954:- | gene-YCL031C_EthanolRed | rna-NM_001178676.1_EthanolRed | cds-NP_009899.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:65003-65896:- | gene-YCL031C_FaliES1 | rna-NM_001178676.1_FaliES1 | cds-NP_009899.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:18490-19383:+ | gene-YCL031C_JAY291 | rna-NM_001178676.1_JAY291 | cds-NP_009899.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:52419-53312:- | gene-YCL031C_MUCL30387 | rna-NM_001178676.1_MUCL30387 | cds-NP_009899.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:52693-53586:- | gene-YCL031C_MUCL30388 | rna-NM_001178676.1_MUCL30388 | cds-NP_009899.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:67096-67989:- | gene-YCL031C_MUCL39482 | rna-NM_001178676.1_MUCL39482 | cds-NP_009899.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:53209-54102:- | gene-YCL031C_MUCL42920 | rna-NM_001178676.1_MUCL42920 | cds-NP_009899.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:64307-65200:- | gene-YCL031C_NCIM3186 | rna-NM_001178676.1_NCIM3186 | cds-NP_009899.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:67586-68479:- | gene-YCL031C_NCYC1407 | rna-NM_001178676.1_NCYC1407 | cds-NP_009899.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:65128-66021:- | gene-YCL031C_PE2H3 | rna-NM_001178676.1_PE2H3 | cds-NP_009899.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:65085-65978:- | gene-YCL031C_PE2H4 | rna-NM_001178676.1_PE2H4 | cds-NP_009899.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:64675-65568:- | gene-YCL031C_S288C | rna-NM_001178676.1_S288C | cds-NP_009899.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:51811-52704:- | gene-YCL031C_SA1 | rna-NM_001178676.1_SA1 | cds-NP_009899.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:65322-66215:- | gene-YCL031C_ThermosaccDry | rna-NM_001178676.1_ThermosaccDry | cds-NP_009899.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:71617-72510:- | gene-YCL031C_VR1 | rna-NM_001178676.1_VR1 | cds-NP_009899.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:65517-66410:- | gene-YCL031C_ZTW1 | rna-NM_001178676.1_ZTW1 | cds-NP_009899.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:95050-95943:- | gene-YCL031C_Sparadoxus | rna-NM_001178676.1_Sparadoxus | cds-NP_009899.1_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |