Gene name: RRP5
Reference locus (S288C): YMR229C
Gene biotype: protein_coding
Description: rRNA biogenesis protein RRP5; RNA binding protein involved in synthesis of 18S and 5.8S rRNAs; component of ribosomal small subunit (SSU) processome and 90S preribosome; required for pre-rRNA packaging and compaction of processome into dense terminal balls; part of Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription with role in biogenesis of large ribosomal subunit; binds single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress
Top 10 interactors (score): UTP6 (0.999); UTP4 (0.999); UTP11 (0.999); ENP1 (0.999); CBF5 (0.999); NOC2 (0.999); SAS10 (0.999); DIM1 (0.999); KRR1 (0.999); RRP7 (0.999); BFR2 (0.999); BMS1 (0.999); ECM16 (0.999); MAK21 (0.999); SOF1 (0.999); MPP10 (0.999); KRE33 (0.999); UTP22 (0.999); EMG1 (0.999); NOP4 (0.999)
Homologues (species, bitscore): PDCD11 (Homo sapiens, 459.5); Pdcd11 (Mus musculus, 431.0); pdcd11 (Danio rerio, 442.6); pdcd11 (Xenopus tropicalis, 419.1); CG5728 (Drosophila melanogaster, 163.3); let-716 (Caenorhabditis elegans, 236.1); AT3G11964 (Arabidopsis thaliana, 501.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:765840-771029:- | gene-YMR229C_AKU4011 | rna-NM_001182736.1_AKU4011 | cds-NP_013956.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:183561-188750:+ | gene-YMR229C_BG1 | rna-NM_001182736.1_BG1 | cds-NP_013956.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:710067-715256:- | gene-YMR229C_Bruggeman | rna-NM_001182736.1_Bruggeman | cds-NP_013956.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:713960-719149:- | gene-YMR229C_CAT1 | rna-NM_001182736.1_CAT1 | cds-NP_013956.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:698100-703289:- | gene-YMR229C_CBS1585 | rna-NM_001182736.1_CBS1585 | cds-NP_013956.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:702369-707558:- | gene-YMR229C_CBS436 | rna-NM_001182736.1_CBS436 | cds-NP_013956.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:809662-814851:- | gene-YMR229C_CBS6412 | rna-NM_001182736.1_CBS6412 | cds-NP_013956.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:697252-702441:- | gene-YMR229C_CBS6413 | rna-NM_001182736.1_CBS6413 | cds-NP_013956.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:720677-725866:- | gene-YMR229C_CENPK1137D | rna-NM_001182736.1_CENPK1137D | cds-NP_013956.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:758306-763495:- | gene-YMR229C_EthanolRed | rna-NM_001182736.1_EthanolRed | cds-NP_013956.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:703958-709147:- | gene-YMR229C_FaliES1 | rna-NM_001182736.1_FaliES1 | cds-NP_013956.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:76870-82059:+ | gene-YMR229C_JAY291 | rna-NM_001182736.1_JAY291 | cds-NP_013956.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:703850-709039:- | gene-YMR229C_MUCL30387 | rna-NM_001182736.1_MUCL30387 | cds-NP_013956.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:711078-716267:- | gene-YMR229C_MUCL30388 | rna-NM_001182736.1_MUCL30388 | cds-NP_013956.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:699170-704359:- | gene-YMR229C_MUCL39482 | rna-NM_001182736.1_MUCL39482 | cds-NP_013956.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:706514-711703:- | gene-YMR229C_MUCL42920 | rna-NM_001182736.1_MUCL42920 | cds-NP_013956.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:725888-731077:- | gene-YMR229C_NCIM3186 | rna-NM_001182736.1_NCIM3186 | cds-NP_013956.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:698827-704016:- | gene-YMR229C_NCYC1407 | rna-NM_001182736.1_NCYC1407 | cds-NP_013956.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:708707-713896:- | gene-YMR229C_PE2H3 | rna-NM_001182736.1_PE2H3 | cds-NP_013956.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:709725-714914:- | gene-YMR229C_PE2H4 | rna-NM_001182736.1_PE2H4 | cds-NP_013956.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:725934-731123:- | gene-YMR229C_S288C | rna-NM_001182736.1_S288C | cds-NP_013956.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:76985-82174:+ | gene-YMR229C_SA1 | rna-NM_001182736.1_SA1 | cds-NP_013956.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:700129-705318:- | gene-YMR229C_ThermosaccDry | rna-NM_001182736.1_ThermosaccDry | cds-NP_013956.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:713242-718431:- | gene-YMR229C_VR1 | rna-NM_001182736.1_VR1 | cds-NP_013956.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:115834-121023:- | gene-YMR229C_ZTW1 | rna-NM_001182736.1_ZTW1 | cds-NP_013956.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:718111-723288:- | gene-YMR229C_Sparadoxus | rna-NM_001182736.1_Sparadoxus | cds-NP_013956.1_Sparadoxus | 89.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |