Gene name: RRP46
Reference locus (S288C): YGR095C
Gene biotype: protein_coding
Description: Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp46p (EXOSC5)
Top 10 interactors (score): RRP42 (0.999); SKI6 (0.999); DIS3 (0.999); MTR4 (0.999); RRP45 (0.999); RRP4 (0.999); RRP40 (0.999); CSL4 (0.999); RRP6 (0.999); RRP43 (0.999); LRP1 (0.999); MTR3 (0.999); MPP6 (0.999); SKI7 (0.999); UTP11 (0.999); IMP4 (0.998); NOP1 (0.997); PWP2 (0.997); UTP6 (0.995); NOC4 (0.995)
Homologues (species, bitscore): EXOSC5 (Homo sapiens, 91.7); Exosc5 (Mus musculus, 88.2); exosc5 (Danio rerio, 97.1); exosc5 (Xenopus tropicalis, 89.7); Rrp46 (Drosophila melanogaster, 60.8); crn-5 (Caenorhabditis elegans, 51.2); AT3G46210 (Arabidopsis thaliana, 56.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:659851-660522:- | gene-YGR095C_AKU4011 | rna-NM_001181224.1_AKU4011 | cds-NP_011609.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:95660-96331:- | gene-YGR095C_BG1 | rna-NM_001181224.1_BG1 | cds-NP_011609.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:662043-662714:- | gene-YGR095C_Bruggeman | rna-NM_001181224.1_Bruggeman | cds-NP_011609.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:660233-660904:- | gene-YGR095C_CAT1 | rna-NM_001181224.1_CAT1 | cds-NP_011609.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:660815-661486:- | gene-YGR095C_CBS1585 | rna-NM_001181224.1_CBS1585 | cds-NP_011609.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:662475-663146:- | gene-YGR095C_CBS436 | rna-NM_001181224.1_CBS436 | cds-NP_011609.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:652508-653179:- | gene-YGR095C_CBS6412 | rna-NM_001181224.1_CBS6412 | cds-NP_011609.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:657450-658121:- | gene-YGR095C_CBS6413 | rna-NM_001181224.1_CBS6413 | cds-NP_011609.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:675348-676019:- | gene-YGR095C_CENPK1137D | rna-NM_001181224.1_CENPK1137D | cds-NP_011609.2_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:647404-648075:- | gene-YGR095C_EthanolRed | rna-NM_001181224.1_EthanolRed | cds-NP_011609.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:651249-651920:- | gene-YGR095C_FaliES1 | rna-NM_001181224.1_FaliES1 | cds-NP_011609.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000396.1:24634-25305:+ | gene-YGR095C_JAY291 | rna-NM_001181224.1_JAY291 | cds-NP_011609.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:659031-659702:- | gene-YGR095C_MUCL30387 | rna-NM_001181224.1_MUCL30387 | cds-NP_011609.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:661843-662514:- | gene-YGR095C_MUCL30388 | rna-NM_001181224.1_MUCL30388 | cds-NP_011609.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:656543-657214:- | gene-YGR095C_MUCL39482 | rna-NM_001181224.1_MUCL39482 | cds-NP_011609.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:666855-667526:- | gene-YGR095C_MUCL42920 | rna-NM_001181224.1_MUCL42920 | cds-NP_011609.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:675671-676342:- | gene-YGR095C_NCIM3186 | rna-NM_001181224.1_NCIM3186 | cds-NP_011609.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:651232-651903:- | gene-YGR095C_NCYC1407 | rna-NM_001181224.1_NCYC1407 | cds-NP_011609.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:653923-654594:- | gene-YGR095C_PE2H3 | rna-NM_001181224.1_PE2H3 | cds-NP_011609.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:659041-659712:- | gene-YGR095C_PE2H4 | rna-NM_001181224.1_PE2H4 | cds-NP_011609.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:675671-676342:- | gene-YGR095C_S288C | rna-NM_001181224.1_S288C | cds-NP_011609.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:102245-102916:- | gene-YGR095C_SA1 | rna-NM_001181224.1_SA1 | cds-NP_011609.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:671619-672290:- | gene-YGR095C_ThermosaccDry | rna-NM_001181224.1_ThermosaccDry | cds-NP_011609.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:768111-768782:- | gene-YGR095C_VR1 | rna-NM_001181224.1_VR1 | cds-NP_011609.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:125873-126544:- | gene-YGR095C_ZTW1 | rna-NM_001181224.1_ZTW1 | cds-NP_011609.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:661671-662342:- | gene-YGR095C_Sparadoxus | rna-NM_001181224.1_Sparadoxus | cds-NP_011609.2_Sparadoxus | 90.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |