Gene name: RRP43
Reference locus (S288C): YCR035C
Gene biotype: protein_coding
Description: Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp43p (OIP2, EXOSC8); protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RRP46 (0.999); MTR3 (0.999); SKI7 (0.999); MPP6 (0.999); MTR4 (0.999); RRP45 (0.999); DIS3 (0.999); RRP42 (0.999); RRP4 (0.999); LRP1 (0.999); RRP6 (0.999); RRP40 (0.999); CSL4 (0.999); SKI6 (0.999); NIP7 (0.996); SKI2 (0.964); DSS1 (0.939); UTP7 (0.931); NOP58 (0.924); NOP56 (0.913)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:185298-186482:- | gene-YCR035C_AKU4011 | rna-NM_001178749.1_AKU4011 | cds-NP_009964.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:39793-40977:- | gene-YCR035C_BG1 | rna-NM_001178749.1_BG1 | cds-NP_009964.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:181585-182769:- | gene-YCR035C_Bruggeman | rna-NM_001178749.1_Bruggeman | cds-NP_009964.2_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:192727-193911:- | gene-YCR035C_CAT1 | rna-NM_001178749.1_CAT1 | cds-NP_009964.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:180059-181243:- | gene-YCR035C_CBS1585 | rna-NM_001178749.1_CBS1585 | cds-NP_009964.2_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:191706-192890:- | gene-YCR035C_CBS436 | rna-NM_001178749.1_CBS436 | cds-NP_009964.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:173912-175096:- | gene-YCR035C_CBS6412 | rna-NM_001178749.1_CBS6412 | cds-NP_009964.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:186236-187420:- | gene-YCR035C_CBS6413 | rna-NM_001178749.1_CBS6413 | cds-NP_009964.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:191180-192364:- | gene-YCR035C_CENPK1137D | rna-NM_001178749.1_CENPK1137D | cds-NP_009964.2_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:183059-184243:- | gene-YCR035C_EthanolRed | rna-NM_001178749.1_EthanolRed | cds-NP_009964.2_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:186175-187359:- | gene-YCR035C_FaliES1 | rna-NM_001178749.1_FaliES1 | cds-NP_009964.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000102.1:22453-23637:- | gene-YCR035C_JAY291 | rna-NM_001178749.1_JAY291 | cds-NP_009964.2_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:178824-180008:- | gene-YCR035C_MUCL30387 | rna-NM_001178749.1_MUCL30387 | cds-NP_009964.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:178615-179799:- | gene-YCR035C_MUCL30388 | rna-NM_001178749.1_MUCL30388 | cds-NP_009964.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:186383-187567:- | gene-YCR035C_MUCL39482 | rna-NM_001178749.1_MUCL39482 | cds-NP_009964.2_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:184178-185362:- | gene-YCR035C_MUCL42920 | rna-NM_001178749.1_MUCL42920 | cds-NP_009964.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:191466-192650:- | gene-YCR035C_NCIM3186 | rna-NM_001178749.1_NCIM3186 | cds-NP_009964.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:188147-189331:- | gene-YCR035C_NCYC1407 | rna-NM_001178749.1_NCYC1407 | cds-NP_009964.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:197195-198379:- | gene-YCR035C_PE2H3 | rna-NM_001178749.1_PE2H3 | cds-NP_009964.2_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:191814-192998:- | gene-YCR035C_PE2H4 | rna-NM_001178749.1_PE2H4 | cds-NP_009964.2_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:191834-193018:- | gene-YCR035C_S288C | rna-NM_001178749.1_S288C | cds-NP_009964.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000083.1:39343-40527:- | gene-YCR035C_SA1 | rna-NM_001178749.1_SA1 | cds-NP_009964.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:186951-188135:- | gene-YCR035C_ThermosaccDry | rna-NM_001178749.1_ThermosaccDry | cds-NP_009964.2_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:197971-199155:- | gene-YCR035C_VR1 | rna-NM_001178749.1_VR1 | cds-NP_009964.2_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:185204-186388:- | gene-YCR035C_ZTW1 | rna-NM_001178749.1_ZTW1 | cds-NP_009964.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:219368-220549:- | gene-YCR035C_Sparadoxus | rna-NM_001178749.1_Sparadoxus | cds-NP_009964.2_Sparadoxus | 88.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |